View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8161_low_6 (Length: 358)
Name: NF8161_low_6
Description: NF8161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8161_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 850709 - 851057
Alignment:
| Q |
1 |
tttattcaagtaatttcttggttagcaaagaaagaaaaacagtaacgtaacaactagagatattaaaagttgcaaa---tagaatacaagtcctttccct |
97 |
Q |
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| T |
850709 |
tttattcaagtaatttcttggttagcgaggaaagaaaaacagtaacgtaacaactagagatattaaaagttgcaaagaatagaatacaagtcctttccct |
850808 |
T |
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| Q |
98 |
tttctattacacgaaaatgtaaggagtaataaggtgaacaaaaaattaaaagtttttgttggttactccaaaagtgattccacacttcacctctcaaacc |
197 |
Q |
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| T |
850809 |
tttttattacacgaaaatgtaaggagtaataaggtgaacaaaaaattaaaagtttttgttggttactccaaaagtgattccacacttcacctctcaaacc |
850908 |
T |
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| Q |
198 |
cttttagtttaagaatactggtgtgcaggaatttgtaagttggtatgtaccacgctgaccttgaaaccgtttatgacacatgacggaaaatccttcaaca |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
850909 |
cttttagtttaagaatactggtgtgcaggaatttgtaagttggtatgtaccacgctgaccttgaaaccgtttatgacacatgacggaaaatccttcaaca |
851008 |
T |
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| Q |
298 |
aatctacaggtacgagaatgacacttgaattttgtcgagaataatgtag |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
851009 |
aatctacaggtacgagaatgacacttgaattttgtcgagatcaatgtag |
851057 |
T |
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