View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8162_high_2 (Length: 476)

Name: NF8162_high_2
Description: NF8162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8162_high_2
NF8162_high_2
[»] chr2 (5 HSPs)
chr2 (2-428)||(12927379-12927804)
chr2 (426-466)||(11965940-11965980)
chr2 (429-466)||(37731087-37731124)
chr2 (427-466)||(37316700-37316739)
chr2 (203-248)||(17183775-17183820)
[»] chr7 (5 HSPs)
chr7 (419-466)||(15325517-15325564)
chr7 (425-464)||(33845191-33845230)
chr7 (429-466)||(2008719-2008756)
chr7 (424-464)||(43081772-43081812)
chr7 (427-464)||(26749153-26749190)
[»] chr8 (6 HSPs)
chr8 (428-466)||(1068753-1068791)
chr8 (425-466)||(15716859-15716900)
chr8 (427-464)||(33107752-33107789)
chr8 (429-466)||(34435624-34435661)
chr8 (429-466)||(44091033-44091070)
chr8 (427-461)||(12241224-12241258)
[»] chr4 (4 HSPs)
chr4 (427-464)||(29227128-29227165)
chr4 (429-464)||(26600086-26600121)
chr4 (424-466)||(21014144-21014186)
chr4 (424-465)||(14443346-14443387)
[»] chr1 (3 HSPs)
chr1 (427-464)||(40439725-40439762)
chr1 (428-466)||(27742756-27742794)
chr1 (429-466)||(38878788-38878825)
[»] chr5 (1 HSPs)
chr5 (430-466)||(21210965-21211001)
[»] chr6 (2 HSPs)
chr6 (427-466)||(33712467-33712506)
chr6 (425-466)||(18064973-18065014)
[»] scaffold0618 (1 HSPs)
scaffold0618 (429-466)||(8840-8877)
[»] chr3 (3 HSPs)
chr3 (424-464)||(32363080-32363120)
chr3 (433-466)||(32631450-32631483)
chr3 (426-466)||(31445995-31446035)


Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 2 - 428
Target Start/End: Complemental strand, 12927804 - 12927379
Alignment:
Q  2 ttcaaatcaaaacgtatgtatggttaccgtgttgatggagagatcataatgcagtcttaaatgtcatccaacatgatatttatgataatggcctcggtga 101  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12927804 ttcaaatcaaaacgtatgtatcgttaccgtgttgatggagagatcataatgcagtcttaaatgtcatccaacatgatatttatgataatggccacggtga 12927705  T
Q  102 tcttacctagttgctataaggtgacaattgaagaactgaaaattacttccttttataaacaaaattacttagaacacatgtctctttttacgagaactaa 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12927704 tcttacctagttgctataaggtgacaattgaagaactgaaaattacttccttttataaacaaaattacttagaacacatgtctctttttacaagaactaa 12927605  T
Q  202 agtcttggttcgaatcaaaccttgagcatgtaataacgttaaaactcagaggatacttgatttacataagnnnnnnnnnnttgaactacttaaacaaaaa 301  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||           |||||||||||||||||||    
T  12927604 agtcttgattcgaatcaaaccttgagcatgtaataacgttaaaactcagaggatacttgatttacagaagaaaaaaaaac-tgaactacttaaacaaaaa 12927506  T
Q  302 gaagttttgttataaatgtctgaaggacacgtataataaaccaacgacgtaattcatagcgttggttcacatcaacacacgatcataatttaactttttt 401  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||| ||||||||    
T  12927505 gaagttttgttataaatgtctgaaggacgcgtataataaaccaacgatgtaattcacagcgttggttcacatcaacacacgataataatttgactttttt 12927406  T
Q  402 acggctgtaccactaatattacaaaaa 428  Q
    ||||| |||||||||||||||||||||    
T  12927405 acggccgtaccactaatattacaaaaa 12927379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 426 - 466
Target Start/End: Complemental strand, 11965980 - 11965940
Alignment:
Q  426 aaagagcaatgttatttgaacaacctttttatgtgacaact 466  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  11965980 aaagagcaatgttatttgaacaacctttttatgtgacaact 11965940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 429 - 466
Target Start/End: Original strand, 37731087 - 37731124
Alignment:
Q  429 gagcaatgttatttgaacaacctttttatgtgacaact 466  Q
    ||||||||||||||||||||||||||||||||||||||    
T  37731087 gagcaatgttatttgaacaacctttttatgtgacaact 37731124  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 466
Target Start/End: Original strand, 37316700 - 37316739
Alignment:
Q  427 aagagcaatgttatttgaacaacctttttatgtgacaact 466  Q
    ||||||||||||||||||||||||||||| | ||||||||    
T  37316700 aagagcaatgttatttgaacaacctttttctatgacaact 37316739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 248
Target Start/End: Complemental strand, 17183820 - 17183775
Alignment:
Q  203 gtcttggttcgaatcaaaccttgagcatgtaataacgttaaaactc 248  Q
    ||||||| ||||||| || ||||||||||||||| |||||||||||    
T  17183820 gtcttggatcgaatccaatcttgagcatgtaatagcgttaaaactc 17183775  T

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Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 419 - 466
Target Start/End: Original strand, 15325517 - 15325564
Alignment:
Q  419 attacaaaaagagcaatgttatttgaacaacctttttatgtgacaact 466  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  15325517 attataaaaagagcaatgttatttgaacaacctttttatgtgacaact 15325564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 425 - 464
Target Start/End: Complemental strand, 33845230 - 33845191
Alignment:
Q  425 aaaagagcaatgttatttgaacaacctttttatgtgacaa 464  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  33845230 aaaagagcaatgttatttgaacaaccttttcatgtgacaa 33845191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 429 - 466
Target Start/End: Original strand, 2008719 - 2008756
Alignment:
Q  429 gagcaatgttatttgaacaacctttttatgtgacaact 466  Q
    |||||||||||||||||||||| |||||||||||||||    
T  2008719 gagcaatgttatttgaacaaccattttatgtgacaact 2008756  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 464
Target Start/End: Original strand, 43081772 - 43081812
Alignment:
Q  424 aaaaagagcaatgttatttgaacaacctttttatgtgacaa 464  Q
    ||||||| |||||||||||||||||| ||||||||||||||    
T  43081772 aaaaagatcaatgttatttgaacaacatttttatgtgacaa 43081812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 464
Target Start/End: Complemental strand, 26749190 - 26749153
Alignment:
Q  427 aagagcaatgttatttgaacaacctttttatgtgacaa 464  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  26749190 aagagcaatgttatttgaacaaccattttttgtgacaa 26749153  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 428 - 466
Target Start/End: Complemental strand, 1068791 - 1068753
Alignment:
Q  428 agagcaatgttatttgaacaacctttttatgtgacaact 466  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1068791 agagcaatgttatttgaacaacctttttatgtgacaact 1068753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 425 - 466
Target Start/End: Original strand, 15716859 - 15716900
Alignment:
Q  425 aaaagagcaatgttatttgaacaacctttttatgtgacaact 466  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  15716859 aaaagagcaatgttatttgaacaacttttttatgtgacaact 15716900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 427 - 464
Target Start/End: Original strand, 33107752 - 33107789
Alignment:
Q  427 aagagcaatgttatttgaacaacctttttatgtgacaa 464  Q
    ||||||||||||||||||||||||||||||||||||||    
T  33107752 aagagcaatgttatttgaacaacctttttatgtgacaa 33107789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 429 - 466
Target Start/End: Original strand, 34435624 - 34435661
Alignment:
Q  429 gagcaatgttatttgaacaacctttttatgtgacaact 466  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34435624 gagcaatgttatttgaacaacctttttatgtgacaact 34435661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 429 - 466
Target Start/End: Complemental strand, 44091070 - 44091033
Alignment:
Q  429 gagcaatgttatttgaacaacctttttatgtgacaact 466  Q
    |||||||||||||||||||||||||| |||||||||||    
T  44091070 gagcaatgttatttgaacaaccttttcatgtgacaact 44091033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 427 - 461
Target Start/End: Complemental strand, 12241258 - 12241224
Alignment:
Q  427 aagagcaatgttatttgaacaacctttttatgtga 461  Q
    ||||||||||||||||||||||| |||||||||||    
T  12241258 aagagcaatgttatttgaacaacttttttatgtga 12241224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 427 - 464
Target Start/End: Original strand, 29227128 - 29227165
Alignment:
Q  427 aagagcaatgttatttgaacaacctttttatgtgacaa 464  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29227128 aagagcaatgttatttgaacaacctttttatgtgacaa 29227165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 464
Target Start/End: Original strand, 26600086 - 26600121
Alignment:
Q  429 gagcaatgttatttgaacaacctttttatgtgacaa 464  Q
    ||||||||||||||||||||| ||||||||||||||    
T  26600086 gagcaatgttatttgaacaacatttttatgtgacaa 26600121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 424 - 466
Target Start/End: Complemental strand, 21014186 - 21014144
Alignment:
Q  424 aaaaagagcaatgttatttgaacaacctttttatgtgacaact 466  Q
    ||||| |||||||||||||||||||||||||  ||||||||||    
T  21014186 aaaaaaagcaatgttatttgaacaaccttttattgtgacaact 21014144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 465
Target Start/End: Complemental strand, 14443387 - 14443346
Alignment:
Q  424 aaaaagagcaatgttatttgaacaacctttttatgtgacaac 465  Q
    ||||||||||||| ||||||||||||| |||| |||||||||    
T  14443387 aaaaagagcaatgatatttgaacaaccattttttgtgacaac 14443346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 427 - 464
Target Start/End: Original strand, 40439725 - 40439762
Alignment:
Q  427 aagagcaatgttatttgaacaacctttttatgtgacaa 464  Q
    ||||||||||||||||||||||||||||||||||||||    
T  40439725 aagagcaatgttatttgaacaacctttttatgtgacaa 40439762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 428 - 466
Target Start/End: Complemental strand, 27742794 - 27742756
Alignment:
Q  428 agagcaatgttatttgaacaacctttttatgtgacaact 466  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  27742794 agagcaatgttatttgaacaacctttttatgtaacaact 27742756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 429 - 466
Target Start/End: Original strand, 38878788 - 38878825
Alignment:
Q  429 gagcaatgttatttgaacaacctttttatgtgacaact 466  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  38878788 gagcaatgttatttgaacaacatttttatgtgacaact 38878825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 430 - 466
Target Start/End: Complemental strand, 21211001 - 21210965
Alignment:
Q  430 agcaatgttatttgaacaacctttttatgtgacaact 466  Q
    |||||||||||||||||||||||||||||||||||||    
T  21211001 agcaatgttatttgaacaacctttttatgtgacaact 21210965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 427 - 466
Target Start/End: Complemental strand, 33712506 - 33712467
Alignment:
Q  427 aagagcaatgttatttgaacaacctttttatgtgacaact 466  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  33712506 aagagcaatgttatttgaacaacctttttatgtaacaact 33712467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 425 - 466
Target Start/End: Original strand, 18064973 - 18065014
Alignment:
Q  425 aaaagagcaatgttatttgaacaacctttttatgtgacaact 466  Q
    |||||| |||||||||||||||||| ||||||||||||||||    
T  18064973 aaaagatcaatgttatttgaacaacttttttatgtgacaact 18065014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 429 - 466
Target Start/End: Original strand, 8840 - 8877
Alignment:
Q  429 gagcaatgttatttgaacaacctttttatgtgacaact 466  Q
    |||||||||||||||||||||||||| |||||||||||    
T  8840 gagcaatgttatttgaacaaccttttcatgtgacaact 8877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 464
Target Start/End: Complemental strand, 32363120 - 32363080
Alignment:
Q  424 aaaaagagcaatgttatttgaacaacctttttatgtgacaa 464  Q
    |||||||| |||||||||||||||||||||| |||||||||    
T  32363120 aaaaagagaaatgttatttgaacaaccttttcatgtgacaa 32363080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 466
Target Start/End: Original strand, 32631450 - 32631483
Alignment:
Q  433 aatgttatttgaacaacctttttatgtgacaact 466  Q
    |||||||||||||||||| |||||||||||||||    
T  32631450 aatgttatttgaacaaccattttatgtgacaact 32631483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 426 - 466
Target Start/End: Original strand, 31445995 - 31446035
Alignment:
Q  426 aaagagcaatgttatttgaacaacctttttatgtgacaact 466  Q
    |||||| |||||||||||||||||| ||||||| |||||||    
T  31445995 aaagaggaatgttatttgaacaaccattttatgagacaact 31446035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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