View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8162_high_3 (Length: 449)
Name: NF8162_high_3
Description: NF8162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8162_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 16 - 438
Target Start/End: Original strand, 43143003 - 43143425
Alignment:
| Q |
16 |
aacttgttgataacttgatatcgaaatcgagtcattcatattcttgccttgctaaatgtgtttaaattacgctagtatttattggcaccttggcaggttg |
115 |
Q |
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| T |
43143003 |
aacttgttgataacttgatatcgaaatcgagtcattcatattcttgccttgctaaatgtgtttaaactacgctagtatttattggcaccttggcaggttg |
43143102 |
T |
|
| Q |
116 |
gggtggagaaaatgcacaaagacacaaagtatgtattgttttcggatgacgatgttaggatacatcctggatcaattggagcgctcactcgtgagatgga |
215 |
Q |
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| T |
43143103 |
gggtggagaaaatgcacaaagacacaaagtatgtattgttttcggatgacgatgttaggatacatcctggatcaatcggagcgctcactcgtgagatgga |
43143202 |
T |
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| Q |
216 |
gaagaaccccgaggtgttacttcaattttgtttcttctgttatatttttagttaggtgtttaatgagaataataataattctatttatctgaattatgtt |
315 |
Q |
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| T |
43143203 |
gaagaaccctgaggtgttacttcatttttgtttcttctgttatatttttagttaggtgtttaatgagaataattataattctatttatctgaattatgtt |
43143302 |
T |
|
| Q |
316 |
tttaactgttttggtgcttcacagatatttattcaaactggataccctcttgatttaccatctagaagtttatggagttactgcatctatgaatatcata |
415 |
Q |
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| T |
43143303 |
tttaactgttttggtgcttcacagatatttattcaaactggataccctcttgatttaccatctagaagtttatggagttactgcatctatgaatatcata |
43143402 |
T |
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| Q |
416 |
tggtacacatctacctctttctt |
438 |
Q |
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| T |
43143403 |
tggtacacatctacctctttctt |
43143425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 95 - 433
Target Start/End: Original strand, 43155045 - 43155379
Alignment:
| Q |
95 |
tattggcaccttggcaggttggggtggagaaaatgcacaaagacacaaagtatgtattgttttcggatgacgatgttaggatacatcctggatcaattgg |
194 |
Q |
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| T |
43155045 |
tattggcatcgtggcaggttggggtggagaaaatgcacaaagacacaaagtatgtattgtttttggatgacgatgttaggatacatcctggatcaattgg |
43155144 |
T |
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| Q |
195 |
agcgctcactcgtgagatggagaagaaccccgaggtgttacttcaattttgtttcttc-tgttatatttttagttaggtgtttaatgagaataataataa |
293 |
Q |
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| T |
43155145 |
agcgctcactcgtgagatggagaagaaccctgaggtattactttgattttgtttcttcttgttctaatt----ttaggcgtttaatgag------agtaa |
43155234 |
T |
|
| Q |
294 |
ttctatttatctgaatta-----tgtttttaactgttttggtgcttcacagatatttattcaaactggataccctcttgatttaccatctagaagtttat |
388 |
Q |
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| T |
43155235 |
ttcttctaacctgaattattttgtggttttaactgttttgatgtttcacagatatttattcaaactggataccctcttgatttgccatctggcagtttag |
43155334 |
T |
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| Q |
389 |
ggagttactgcatctatgaatatcatatggtacacatctacctct |
433 |
Q |
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| T |
43155335 |
ggagttactgcatctatgaatatcatatggtacacatctacctct |
43155379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 9e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 336 - 433
Target Start/End: Complemental strand, 33834306 - 33834209
Alignment:
| Q |
336 |
acagatatttattcaaactggataccctcttgatttaccatctagaagtttatggagttactgcatctatgaatatcatatggtacacatctacctct |
433 |
Q |
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|||||||||||| ||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
33834306 |
acagatatttatacaaactggatatcctcttgatttaccatctggaagtttagggagttactgcatctatgaataccatatggtacacacctacctct |
33834209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 108 - 215
Target Start/End: Complemental strand, 33834660 - 33834553
Alignment:
| Q |
108 |
gcaggttggggtggagaaaatgcacaaagacacaaagtatgtattgttttcggatgacgatgttaggatacatcctggatcaattggagcgctcactcgt |
207 |
Q |
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| T |
33834660 |
gcaggttggagtggagaccatggataaagacagcaaatatgtattgtttttagatgatgatgtgagcctacatcctggatcaataggtgcactcgctcgt |
33834561 |
T |
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| Q |
208 |
gagatgga |
215 |
Q |
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| T |
33834560 |
gagatgga |
33834553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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