View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8162_high_6 (Length: 277)
Name: NF8162_high_6
Description: NF8162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8162_high_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 20 - 276
Target Start/End: Original strand, 43699406 - 43699662
Alignment:
| Q |
20 |
ccctccaaggacgacccaatgttccacgcacctctgattttctgccttcatcttcaggtgacatggtgaaattacaatgttggaatgtgaaacctgtttt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43699406 |
ccctccaaggacgacccaatgttccacgcacctctgattttttgccttcatcttcaggtgacatggtgaaattacaatgttggaatgtgaaacctgtttt |
43699505 |
T |
|
| Q |
120 |
ttcagatggatttccacgtgactgagcggtgaataccacaaactgccgatagcgtgcataaaccatacagtcttgaaatacagctgcagcgttgccgaag |
219 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43699506 |
ttcagatggatttccacgtgattgtgcggtgaataccacgaactgtcgatagcgtgcataaaccatacagtcttgaaatacagctgcagcgttgccgaag |
43699605 |
T |
|
| Q |
220 |
atgaagtcgacgataccatagatttcacagtttttgtagaattgtcttccggaaaca |
276 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
43699606 |
atgaagtcgacggtaccatatatttcacagtttttgtagaattgtcttccggaaaca |
43699662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 20 - 276
Target Start/End: Original strand, 45514208 - 45514464
Alignment:
| Q |
20 |
ccctccaaggacgacccaatgttccacgcacctctgattttctgccttcatcttcaggtgacatggtgaaattacaatgttggaatgtgaaacctgtttt |
119 |
Q |
| |
|
|||||||||||||||| |||||| || |||||||||| ||||| ||||||||||||||||| ||||| |||||| |||||||||||||||||||||| |
|
|
| T |
45514208 |
ccctccaaggacgacctaatgttgcatgcacctctgactttctcttctcatcttcaggtgacattgtgaatttacaacgttggaatgtgaaacctgtttt |
45514307 |
T |
|
| Q |
120 |
ttcagatggatttccacgtgactgagcggtgaataccacaaactgccgatagcgtgcataaaccatacagtcttgaaatacagctgcagcgttgccgaag |
219 |
Q |
| |
|
|||| ||||| || |||||||||| ||||||||| ||||||||| | |||||||||||||||||| ||||||||||||||||| |||||||||||| || |
|
|
| T |
45514308 |
ttcatatggactttcacgtgactgtgcggtgaatgtcacaaactgtctatagcgtgcataaaccatgcagtcttgaaatacagcggcagcgttgccgtag |
45514407 |
T |
|
| Q |
220 |
atgaagtcgacgataccatagatttcacagtttttgtagaattgtcttccggaaaca |
276 |
Q |
| |
|
||||||||||| | || || |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
45514408 |
atgaagtcgacagtgccgtatatttcacagtttttgtagaattgtctaccggaaaca |
45514464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University