View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8162_low_1 (Length: 517)
Name: NF8162_low_1
Description: NF8162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8162_low_1 |
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| [»] chr7 (10 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 238 - 517
Target Start/End: Complemental strand, 28585481 - 28585202
Alignment:
| Q |
238 |
gtagtatatatttcatgtatacattacaagtcaatttgacatagacgaaacaagtttgtccttgtgatttttacatccttaactgttttgaggaatggtg |
337 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
28585481 |
gtagtatatatttcatgtatacattacaagtcgatttgacatagacaaaacaagtttgcccttgtgatttttacatccttaactgttttgaggaatggtg |
28585382 |
T |
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| Q |
338 |
ttgtgttgtagattgctggagggttgtgtgacaatctgttgacaagcattgtgagagcatgggactacgagaagccgatgtttgttgcaccatcaatgga |
437 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28585381 |
ttgtgttgtagatttctggagggttgtgtgacaatctgttgacaagcattgtgagagcatgggactacgagaagccgatgtttgttgcaccatcaatgga |
28585282 |
T |
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| Q |
438 |
tggttgtatgtggagaaaccctttcacagaacagaactccatgagcattgaagagcttggtgttactcttaccccacctg |
517 |
Q |
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| T |
28585281 |
tggttgtatgtggagaaaccctttcacagaacagaacttcatgagcattgaagagcttggtgttactcttatcccacctg |
28585202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 240 - 517
Target Start/End: Original strand, 28404320 - 28404597
Alignment:
| Q |
240 |
agtatatatttcatgtatacattacaagtcaatttgacatagacgaaacaagtttgtccttgtgatttttacatccttaactgttttgaggaatggtgtt |
339 |
Q |
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||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28404320 |
agtatatatgtgatgtatacattacaagtcgatttgacatagacgaaacaagtttgtccttgtgatttttacatccttaactgttttgaggaatggtgtt |
28404419 |
T |
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| Q |
340 |
gtgttgtagattgctggagggttgtgtgacaatctgttgacaagcattgtgagagcatgggactacgagaagccgatgtttgttgcaccatcaatggatg |
439 |
Q |
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| T |
28404420 |
gtgttgtagattgctggagggttgtgtgacaatctgttgacaagcattgtgagagcatgggactacgagaagccgatgttcgttgcaccatcaatggatg |
28404519 |
T |
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| Q |
440 |
gttgtatgtggagaaaccctttcacagaacagaactccatgagcattgaagagcttggtgttactcttaccccacctg |
517 |
Q |
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| T |
28404520 |
gttgtatgtggagaaaccctttcacagaacagaacttcatgagcattgaagagcttggtgttactctcatcccacctg |
28404597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 338 - 517
Target Start/End: Original strand, 28417853 - 28418032
Alignment:
| Q |
338 |
ttgtgttgtagattgctggagggttgtgtgacaatctgttgacaagcattgtgagagcatgggactacgagaagccgatgtttgttgcaccatcaatgga |
437 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28417853 |
ttgtgttgtagattgctggagggttgtgtgacaatctattgacaagcattgtgagagcatgggactacgagaagccgatgttcgttgcaccatcaatgga |
28417952 |
T |
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| Q |
438 |
tggttgtatgtggagaaaccctttcacagaacagaactccatgagcattgaagagcttggtgttactcttaccccacctg |
517 |
Q |
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| T |
28417953 |
tggttgtatgtggagaaaccctttcacagaacagaacttcatgagcattgaagagcttggtgttactcttatcccacctg |
28418032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 15 - 173
Target Start/End: Complemental strand, 28585700 - 28585542
Alignment:
| Q |
15 |
gacatcatggtcattgctcccttatcagcacatactctttctaaggtaatcgatccgaacagttcttactttctactgtcatatgatgaacaatgttgcc |
114 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28585700 |
gacatcatggtcatttctcccttatcagcacatactctttctaaggtaatcaatcccaacagctcttactttctactgtcatatgatgaacaatgttgcc |
28585601 |
T |
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| Q |
115 |
aagtttacatttcataattattttaaactacattgaggttttgattagttgtgctcctg |
173 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28585600 |
aagtttacatttcataattattttaaactacattgaggttttgattagttgtgctcctg |
28585542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 315 - 517
Target Start/End: Complemental strand, 28580405 - 28580202
Alignment:
| Q |
315 |
cttaactgttttgaggaatggtgtt-gtgttgtagattgctggagggttgtgtgacaatctgttgacaagcattgtgagagcatgggactacgagaagcc |
413 |
Q |
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||||||| ||||||| |||||||| ||||||||||||||||| ||||| |||||||||||||||| | |||||| |||||||||||||||||||||| |
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| T |
28580405 |
cttaactattttgagacatggtgtttgtgttgtagattgctggggggtttagtgacaatctgttgacgactattgtgcgagcatgggactacgagaagcc |
28580306 |
T |
|
| Q |
414 |
gatgtttgttgcaccatcaatggatggttgtatgtggagaaaccctttcacagaacagaactccatgagcattgaagagcttggtgttactcttacccca |
513 |
Q |
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||||||||||||||| |||||| ||| | ||||||||||| |||||||||||||| | | ||||| |||||| |||||||||||||| ||| || | |
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| T |
28580305 |
gatgtttgttgcaccgtcaatgaatgatgccatgtggagaaatcctttcacagaacaacaattgatgaggattgaaaagcttggtgttactgttatccaa |
28580206 |
T |
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| Q |
514 |
cctg |
517 |
Q |
| |
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|||| |
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| T |
28580205 |
cctg |
28580202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 343 - 468
Target Start/End: Original strand, 28420253 - 28420378
Alignment:
| Q |
343 |
ttgtagattgctggagggttgtgtgacaatctgttgacaagcattgtgagagcatgggactacgagaagccgatgtttgttgcaccatcaatggatggtt |
442 |
Q |
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|||||||||| ||||||||||||||| |||||| | ||||| ||||||||| ||||| |||| ||||||| |||||||| |||||||||||| ||| | |
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| T |
28420253 |
ttgtagattggtggagggttgtgtgataatctgctaacaagtattgtgagatcatggaactataagaagccaatgtttgtagcaccatcaatgaatgatg |
28420352 |
T |
|
| Q |
443 |
gtatgtggagaaaccctttcacagaa |
468 |
Q |
| |
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||||||||||| ||||| |||||| |
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| T |
28420353 |
caatgtggagaaatcctttgacagaa |
28420378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 343 - 468
Target Start/End: Complemental strand, 28581937 - 28581812
Alignment:
| Q |
343 |
ttgtagattgctggagggttgtgtgacaatctgttgacaagcattgtgagagcatgggactacgagaagccgatgtttgttgcaccatcaatggatggtt |
442 |
Q |
| |
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|||||||||| ||||||||||||||| |||||| | ||||| ||||||||| ||||| |||| ||||||| |||||||| |||||||||||| ||| | |
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| T |
28581937 |
ttgtagattggtggagggttgtgtgataatctgctaacaagtattgtgagatcatggaactataagaagccaatgtttgtagcaccatcaatgaatgatg |
28581838 |
T |
|
| Q |
443 |
gtatgtggagaaaccctttcacagaa |
468 |
Q |
| |
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||||||||||| ||||| |||||| |
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| T |
28581837 |
caatgtggagaaatcctttgacagaa |
28581812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 323 - 434
Target Start/End: Complemental strand, 27834870 - 27834771
Alignment:
| Q |
323 |
ttttgaggaatggtgttgtgttgtagattgctggagggttgtgtgacaatctgttgacaagcattgtgagagcatgggactacgagaagccgatgtttgt |
422 |
Q |
| |
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||||||| ||| ||||||| |||||||||||| |||||||||||||||||| ||||| |||| ||||||||||||||||| ||||||| |
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| T |
27834870 |
ttttgagagatgatgttgtgctgtagattgctgcagggttgtgtgacaatcttttgac------------agcaagggactacgagaagccggtgtttgt |
27834783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 15 - 50
Target Start/End: Original strand, 28404096 - 28404131
Alignment:
| Q |
15 |
gacatcatggtcattgctcccttatcagcacatact |
50 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
28404096 |
gacatcatggtcattgctcccttatcagcacatact |
28404131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 28417647 - 28417679
Alignment:
| Q |
18 |
atcatggtcattgctcccttatcagcacatact |
50 |
Q |
| |
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||||| ||||||||||||||||||||||||||| |
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| T |
28417647 |
atcatcgtcattgctcccttatcagcacatact |
28417679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 374
Target Start/End: Complemental strand, 12983618 - 12983585
Alignment:
| Q |
341 |
tgttgtagattgctggagggttgtgtgacaatct |
374 |
Q |
| |
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||||||||||||||||||| |||||||||||||| |
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| T |
12983618 |
tgttgtagattgctggaggattgtgtgacaatct |
12983585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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