View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8162_low_6 (Length: 343)
Name: NF8162_low_6
Description: NF8162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8162_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 36367931 - 36368254
Alignment:
| Q |
1 |
cggaaagaagtcattctgcatgcactagaatattcttcactacctagtcagcagtgtccatgatttattgtgtggaaaatataataaagcagccatccaa |
100 |
Q |
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| T |
36367931 |
cggaaagaagtcattctgcatgcactggaatattcttcacttcctagtcagcagtgttcatgatttattgtgtggaaaatataataaagcagccatccaa |
36368030 |
T |
|
| Q |
101 |
actatgtgttgttgaagagtaaaatttttcagttggagtatttctattttcttcttttcataaagaggagcttaatggactctgctaaagctcatctcta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36368031 |
actatgtgttgttgaagagtaaaatttttcagttggagtatttctattttcttcttttcataaagaggaacttaatggactctgctaaagctcatctcta |
36368130 |
T |
|
| Q |
201 |
ccttgtcacaacccaaaatcttaaacacaacaagttgttattattacataatactaataattggctacttaattatttgattctactccttcttgccttt |
300 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36368131 |
ccttgtcacaacccaaaatcataaac---acaagttgttattattacataatactaataattggctacttaattatttgattctactccttcttgccttt |
36368227 |
T |
|
| Q |
301 |
tctttttgttcctgttcttctgatatc |
327 |
Q |
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| T |
36368228 |
tctttttgttcctgttcttctgatatc |
36368254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 146 - 325
Target Start/End: Complemental strand, 55676838 - 55676671
Alignment:
| Q |
146 |
attttcttcttttcataaagaggagcttaatggactctgctaaagctcatctctaccttgtcacaacccaaaatcttaaacacaacaagttgttattatt |
245 |
Q |
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||||||||||| |||||||||||| ||||| ||||||| ||||| ||||||||||||||| |||||||||||||| | |||||||||||||||||||||| |
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| T |
55676838 |
attttcttcttctcataaagaggaacttaaaggactctcctaaaactcatctctaccttgccacaacccaaaatcattaacacaacaagttgttattatt |
55676739 |
T |
|
| Q |
246 |
acataatactaataattggctacttaattatttgattctactccttcttgccttttctttttgttcctgttcttctgata |
325 |
Q |
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||| |||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
55676738 |
acacaatactaacaattg------------cttgattctactcattcttgccttttctttttgttcctgttcttctgata |
55676671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 121; Significance: 6e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 144 - 325
Target Start/End: Complemental strand, 34712712 - 34712539
Alignment:
| Q |
144 |
ctattttcttcttttcataaagaggagcttaatggactctgctaaagctcatctctaccttgtcacaacccaaaatcttaaacacaacaagttgttatta |
243 |
Q |
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||||||||||||| |||||||||||| ||||||||||||||| ||| ||||||||||||||| |||||||||||||| | |||||||||||||||||||| |
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| T |
34712712 |
ctattttcttcttctcataaagaggaacttaatggactctgcaaaaactcatctctaccttgccacaacccaaaatcattaacacaacaagttgttatta |
34712613 |
T |
|
| Q |
244 |
ttacataatactaataattggctacttaattatttgattctactccttcttgccttttctttttgttcctgttcttctgata |
325 |
Q |
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|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34712612 |
ttacataatactaacaattggctac--------ttgattctactccttcttgccttttctttttgttcctgttcttctgata |
34712539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 42772531 - 42772599
Alignment:
| Q |
162 |
aaagaggagcttaatggactctgctaaagctcatctctaccttgtcacaacccaaaatcttaaacacaa |
230 |
Q |
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|||||||| || |||||||||||||||| ||||||||||||||||| |||||||| ||||||||| |
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| T |
42772531 |
aaagaggaactcaatggactctgctaaaaaatttctctaccttgtcacaatccaaaatcataaacacaa |
42772599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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