View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8162_low_8 (Length: 250)

Name: NF8162_low_8
Description: NF8162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8162_low_8
NF8162_low_8
[»] chr4 (1 HSPs)
chr4 (1-209)||(36367615-36367823)
[»] chr2 (3 HSPs)
chr2 (1-84)||(38730171-38730253)
chr2 (10-89)||(13951124-13951203)
chr2 (10-89)||(14092331-14092410)
[»] chr3 (2 HSPs)
chr3 (5-74)||(560874-560943)
chr3 (6-72)||(41106482-41106548)
[»] scaffold0008 (1 HSPs)
scaffold0008 (1-101)||(117312-117416)
[»] chr5 (2 HSPs)
chr5 (4-87)||(38537947-38538030)
chr5 (8-60)||(2221354-2221406)
[»] chr7 (1 HSPs)
chr7 (5-81)||(38332007-38332083)


Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 36367823 - 36367615
Alignment:
Q  1 ttcacttcaacaaatgaactcgacatatcaatctaggatttaagctagattcttaagagggttattagttgatagatttaaagttacaaacgcacagtta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36367823 ttcacttcaacaaatgaactcgacatatcaatctaggatttaagctagattcttaagagggttattagttgatagatttaaagttacaaacgcacagtta 36367724  T
Q  101 tgacgtatgaacttaaaatgataaagtaaaagaaaaataaaggcacgaagtacacaagcacactttgtggcggccaaaaccgtcggaaatgtttctaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36367723 tgacgtatgaacttaaaatgataaagtaaaagaaaaataaaggcacgaagtacacaagcacactttgtggcggccaaaaccgtgggaaatgtttctaatt 36367624  T
Q  201 tcttttttg 209  Q
    |||||||||    
T  36367623 tcttttttg 36367615  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 38730253 - 38730171
Alignment:
Q  1 ttcacttcaacaaatgaactcgacatatcaatctaggatttaagctagattcttaagagggttattagttgatagatttaaagt 84  Q
    ||||||||||||||||||||||||| ||||||||||||||| || |||| || ||| ||| || ||||||||||||||||||||    
T  38730253 ttcacttcaacaaatgaactcgacaaatcaatctaggatttgagttaga-tcctaataggtttcttagttgatagatttaaagt 38730171  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 89
Target Start/End: Original strand, 13951124 - 13951203
Alignment:
Q  10 acaaatgaactcgacatatcaatctaggatttaagctagattcttaagagggttattagttgatagatttaaagttacaa 89  Q
    |||||||||||| | | ||||||||||||||  || ||||  |||||||||||| ||||||||||  |||||||||||||    
T  13951124 acaaatgaactcaatagatcaatctaggattcgagttagacccttaagagggtttttagttgataattttaaagttacaa 13951203  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 89
Target Start/End: Original strand, 14092331 - 14092410
Alignment:
Q  10 acaaatgaactcgacatatcaatctaggatttaagctagattcttaagagggttattagttgatagatttaaagttacaa 89  Q
    |||||||||||| | | ||||||||||||||  || ||||  |||||||||||| ||||||||||  |||||||||||||    
T  14092331 acaaatgaactcaatagatcaatctaggattcgagttagacccttaagagggtttttagttgataattttaaagttacaa 14092410  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 560943 - 560874
Alignment:
Q  5 cttcaacaaatgaactcgacatatcaatctaggatttaagctagattcttaagagggttattagttgata 74  Q
    ||||||||||||||||||||||||||||||| ||||  || || || ||||||||| || ||||||||||    
T  560943 cttcaacaaatgaactcgacatatcaatctatgattcgagttacatccttaagaggcttcttagttgata 560874  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 41106482 - 41106548
Alignment:
Q  6 ttcaacaaatgaactcgacatatcaatctaggatttaagctagattcttaagagggttattagttga 72  Q
    |||||||||||||||||| | |||||| ||||||||||| || || |||||| ||||| || |||||    
T  41106482 ttcaacaaatgaactcgaaacatcaatataggatttaagttaaatccttaagggggttctttgttga 41106548  T

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Target: scaffold0008 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 117416 - 117312
Alignment:
Q  1 ttcacttcaacaaatgaactcgacatatcaatctaggatttaagctagattcttaagagggtt----attagttgatagatttaaagttacaaacgcaca 96  Q
    ||||||||||||||| |||||||||||||||| ||  ||| ||| |||||  |||| | | ||    |||||||||||||||||||||||||| ||||||    
T  117416 ttcacttcaacaaataaactcgacatatcaatatataattcaagttagatcgttaataagatttttaattagttgatagatttaaagttacaagcgcaca 117317  T
Q  97 gttat 101  Q
     ||||    
T  117316 attat 117312  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 38537947 - 38538030
Alignment:
Q  4 acttcaacaaatgaactcgacatatcaatctaggatttaagctagattcttaagagggttattagttgatagatttaaagttac 87  Q
    ||||||| ||||||||| |||  |||||||||| ||||||| ||||| | || ||||||| | |||||| ||||||||||||||    
T  38537947 acttcaaaaaatgaacttgactaatcaatctagaatttaagttagatccatatgagggttttaagttgacagatttaaagttac 38538030  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 2221354 - 2221406
Alignment:
Q  8 caacaaatgaactcgacatatcaatctaggatttaagctagattcttaagagg 60  Q
    |||||||||||||||| | ||||||||| |||| ||| |||||||||||||||    
T  2221354 caacaaatgaactcgaaaaatcaatctaagattcaagttagattcttaagagg 2221406  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 38332007 - 38332083
Alignment:
Q  5 cttcaacaaatgaactcgacatatcaatctaggatttaagctagattcttaagagggttattagttgatagatttaa 81  Q
    ||||||||||| |||||||||||||||| |||||||| || |||||  |||||| |||| | |||||| || |||||    
T  38332007 cttcaacaaattaactcgacatatcaatttaggatttgagttagatctttaagaaggttctaagttgacaggtttaa 38332083  T

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