View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8162_low_9 (Length: 239)

Name: NF8162_low_9
Description: NF8162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8162_low_9
NF8162_low_9
[»] chr3 (7 HSPs)
chr3 (8-224)||(24982084-24982300)
chr3 (68-224)||(24923448-24923604)
chr3 (68-224)||(25085076-25085232)
chr3 (71-224)||(24497250-24497403)
chr3 (71-224)||(24919877-24920030)
chr3 (71-224)||(31825548-31825701)
chr3 (68-205)||(21584585-21584722)
[»] chr7 (3 HSPs)
chr7 (65-223)||(10575426-10575584)
chr7 (73-193)||(39954838-39954958)
chr7 (116-217)||(354450-354551)
[»] chr8 (1 HSPs)
chr8 (68-214)||(14261020-14261166)
[»] chr2 (2 HSPs)
chr2 (96-208)||(41027626-41027738)
chr2 (81-179)||(30012096-30012194)
[»] chr4 (3 HSPs)
chr4 (90-208)||(22898607-22898725)
chr4 (90-208)||(22950275-22950393)
chr4 (73-193)||(53328783-53328903)
[»] chr5 (1 HSPs)
chr5 (81-193)||(26358549-26358661)


Alignment Details
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 8 - 224
Target Start/End: Complemental strand, 24982300 - 24982084
Alignment:
Q  8 gaacaatcacatgttcaaattacacagttaaagcataaaccagaatagagtgtttattcatcttcaacctccgaaaccatagagggttcttccctgtctc 107  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||  ||| ||||||||| ||||||||||||||||||||||| ||||||    
T  24982300 gaacaatcacatgttcaaattacacagttaaagcataaaacagaatatagtgttacttcttcttcaaccaccgaaaccatagagggttcttccttgtctc 24982201  T
Q  108 ttcaaagcataaacaacatccatagcagtaacagtcttcctccttgcgtgttcagtgtatgtcacagcatcacgaatcacattctccaagaagatcttca 207  Q
    ||||||||||| ||||||||||| || ||||||||||||||||| ||||| ||||||||||| || |||||||| || ||||||||||||||||||||||    
T  24982200 ttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacattctccaagaagatcttca 24982101  T
Q  208 agacacctctggtttct 224  Q
    |||||||||||||||||    
T  24982100 agacacctctggtttct 24982084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 68 - 224
Target Start/End: Original strand, 24923448 - 24923604
Alignment:
Q  68 tcttcaacctccgaaaccatagagggttcttccctgtctcttcaaagcataaacaacatccatagcagtaacagtcttcctccttgcgtgttcagtgtat 167  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||| || || || ||||||||||||||||| |||||||||    
T  24923448 tcttcaacctccaaatccatagagggttcttccctgtctcttcaaagcatagacaacatccatggctgtcactgtcttcctccttgcgtgctcagtgtat 24923547  T
Q  168 gtcacagcatcacgaatcacattctccaagaagatcttcaagacacctctggtttct 224  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  24923548 gtcacagcatcacgaatgacattctccaagaagatcttcaagacacctctggtttct 24923604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 68 - 224
Target Start/End: Complemental strand, 25085232 - 25085076
Alignment:
Q  68 tcttcaacctccgaaaccatagagggttcttccctgtctcttcaaagcataaacaacatccatagcagtaacagtcttcctccttgcgtgttcagtgtat 167  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| || || |||||||||||||||||||| |||||||||    
T  25085232 tcttcaacctccaaaaccatagagggttcttccctgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgcgtgctcagtgtat 25085133  T
Q  168 gtcacagcatcacgaatcacattctccaagaagatcttcaagacacctctggtttct 224  Q
    || || |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25085132 gtaactgcatcacggatcacattctccaagaagatcttcaagacacctctggtttct 25085076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 71 - 224
Target Start/End: Original strand, 24497250 - 24497403
Alignment:
Q  71 tcaacctccgaaaccatagagggttcttccctgtctcttcaaagcataaacaacatccatagcagtaacagtcttcctccttgcgtgttcagtgtatgtc 170  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| || || |||||||||||||||||||| |||||||||||     
T  24497250 tcaacctccaaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgcgtgctcagtgtatgta 24497349  T
Q  171 acagcatcacgaatcacattctccaagaagatcttcaagacacctctggtttct 224  Q
    || |||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  24497350 actgcatcacggatcacattttccaagaagatcttcaagacacctctggtttct 24497403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 71 - 224
Target Start/End: Original strand, 24919877 - 24920030
Alignment:
Q  71 tcaacctccgaaaccatagagggttcttccctgtctcttcaaagcataaacaacatccatagcagtaacagtcttcctccttgcgtgttcagtgtatgtc 170  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||| || |||||||| || || || ||||||||||| ||||| ||||||||||||    
T  24919877 tcaacctccgaatccatagagggttcttccctgcctcttcaaagcatagacgacatccatggctgtcactgtcttcctcctagcgtgctcagtgtatgtc 24919976  T
Q  171 acagcatcacgaatcacattctccaagaagatcttcaagacacctctggtttct 224  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  24919977 acagcatcacgaatgacattctctaagaagatcttcaagacacctctggtttct 24920030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 71 - 224
Target Start/End: Original strand, 31825548 - 31825701
Alignment:
Q  71 tcaacctccgaaaccatagagggttcttccctgtctcttcaaagcataaacaacatccatagcagtaacagtcttcctccttgcgtgttcagtgtatgtc 170  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||| || ||||| ||||||||||| ||||| |||||||||||     
T  31825548 tcaacctccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgtgctcagtgtatgtg 31825647  T
Q  171 acagcatcacgaatcacattctccaagaagatcttcaagacacctctggtttct 224  Q
    || |||||||| || |||||||||||||||||||||||||||||||| ||||||    
T  31825648 accgcatcacggatgacattctccaagaagatcttcaagacacctctagtttct 31825701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 68 - 205
Target Start/End: Original strand, 21584585 - 21584722
Alignment:
Q  68 tcttcaacctccgaaaccatagagggttcttccctgtctcttcaaagcataaacaacatccatagcagtaacagtcttcctccttgcgtgttcagtgtat 167  Q
    ||||||||||||||| ||||| || |||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||     
T  21584585 tcttcaacctccgaatccataaagcgttcttccttgcctcttcaaagcataaacaacatccatagcagtcacagtcttcctccttgcatgctcagtgtac 21584684  T
Q  168 gtcacagcatcacgaatcacattctccaagaagatctt 205  Q
    || || |||||||||||||||||||||||||| |||||    
T  21584685 gtaaccgcatcacgaatcacattctccaagaaaatctt 21584722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 65 - 223
Target Start/End: Complemental strand, 10575584 - 10575426
Alignment:
Q  65 tcatcttcaacctccgaaaccatagagggttcttccctgtctcttcaaagcataaacaacatccatagcagtaacagtcttcctccttgcgtgttcagtg 164  Q
    |||||||||||| ||||||||||||||||||||||| |||||||| |  || |||||||||||||||||||| ||||| |||||||| || || ||||||    
T  10575584 tcatcttcaaccaccgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtcacagttttcctcctcgcatgctcagtg 10575485  T
Q  165 tatgtcacagcatcacgaatcacattctccaagaagatcttcaagacacctctggtttc 223  Q
    || || |||||||| |  || ||||||||||||||||||||||| |||||||| |||||    
T  10575484 taagtaacagcatctcttataacattctccaagaagatcttcaacacacctcttgtttc 10575426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 73 - 193
Target Start/End: Original strand, 39954838 - 39954958
Alignment:
Q  73 aacctccgaaaccatagagggttcttccctgtctcttcaaagcataaacaacatccatagcagtaacagtcttcctccttgcgtgttcagtgtatgtcac 172  Q
    |||| |||||||| ||||| || |||||||| ||||| | |||||| ||||||||||| || |||||||| |||||||| || || |||||||| || ||    
T  39954838 aaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaac 39954937  T
Q  173 agcatcacgaatcacattctc 193  Q
    |||||||||||||||||||||    
T  39954938 agcatcacgaatcacattctc 39954958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 116 - 217
Target Start/End: Complemental strand, 354551 - 354450
Alignment:
Q  116 ataaacaacatccatagcagtaacagtcttcctccttgcgtgttcagtgtatgtcacagcatcacgaatcacattctccaagaagatcttcaagacacct 215  Q
    ||||||||||||||||||||| | ||||||||||||||| || |||||||| || |||||||||| |||| |||||| |||||| |||||||| || |||    
T  354551 ataaacaacatccatagcagtcagagtcttcctccttgcatgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcct 354452  T
Q  216 ct 217  Q
    ||    
T  354451 ct 354450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 68 - 214
Target Start/End: Original strand, 14261020 - 14261166
Alignment:
Q  68 tcttcaacctccgaaaccatagagggttcttccctgtctcttcaaagcataaacaacatccatagcagtaacagtcttcctccttgcgtgttcagtgtat 167  Q
    ||||||||||||||||||||| |  || ||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||| || |||||||| ||     
T  14261020 tcttcaacctccgaaaccatacaaagtccttccttgtctcttcaacgcataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagtatac 14261119  T
Q  168 gtcacagcatcacgaatcacattctccaagaagatcttcaagacacc 214  Q
    || |||||||| |  ||||||||||||||||| |||||||| |||||    
T  14261120 gtaacagcatctcttatcacattctccaagaaaatcttcaacacacc 14261166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 96 - 208
Target Start/End: Complemental strand, 41027738 - 41027626
Alignment:
Q  96 cttccctgtctcttcaaagcataaacaacatccatagcagtaacagtcttcctccttgcgtgttcagtgtatgtcacagcatcacgaatcacattctcca 195  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| || ||||| || |||||||||||||| ||||||||||    
T  41027738 cttccttgtctcttcaatgcataaacaacatccatagcagtaacagtctttctcctagcgtgctctgtgtaagtaacagcatcacgaataacattctcca 41027639  T
Q  196 agaagatcttcaa 208  Q
    | |||||||||||    
T  41027638 aaaagatcttcaa 41027626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 179
Target Start/End: Complemental strand, 30012194 - 30012096
Alignment:
Q  81 aaaccatagagggttcttccctgtctcttcaaagcataaacaacatccatagcagtaacagtcttcctccttgcgtgttcagtgtatgtcacagcatca 179  Q
    |||||||| ||||| ||||| || ||||| |  |||||||| |||||||||||||| || ||||| |  |  |||||||||||||| || |||||||||    
T  30012194 aaaccataaagggtccttccttgcctcttgagcgcataaaccacatccatagcagtcactgtcttgcgacgagcgtgttcagtgtaagtaacagcatca 30012096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 90 - 208
Target Start/End: Complemental strand, 22898725 - 22898607
Alignment:
Q  90 agggttcttccctgtctcttcaaagcataaacaacatccatagcagtaacagtcttcctccttgcgtgttcagtgtatgtcacagcatcacgaatcacat 189  Q
    |||||||||||||||||||| |  |||||||| ||||||||||||||||| |||||||| || ||||| |||||||| ||||||||||| | ||||||||    
T  22898725 agggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacat 22898626  T
Q  190 tctccaagaagatcttcaa 208  Q
    ||||||| || ||||||||    
T  22898625 tctccaaaaatatcttcaa 22898607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 90 - 208
Target Start/End: Complemental strand, 22950393 - 22950275
Alignment:
Q  90 agggttcttccctgtctcttcaaagcataaacaacatccatagcagtaacagtcttcctccttgcgtgttcagtgtatgtcacagcatcacgaatcacat 189  Q
    |||||||||||||||||||| |  |||||||| ||||||||||||||||| |||||||| || ||||| |||||||| ||||||||||| | ||||||||    
T  22950393 agggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacat 22950294  T
Q  190 tctccaagaagatcttcaa 208  Q
    ||||||| || ||||||||    
T  22950293 tctccaaaaatatcttcaa 22950275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 73 - 193
Target Start/End: Complemental strand, 53328903 - 53328783
Alignment:
Q  73 aacctccgaaaccatagagggttcttccctgtctcttcaaagcataaacaacatccatagcagtaacagtcttcctccttgcgtgttcagtgtatgtcac 172  Q
    |||| |||||||| || || || |||||||| ||||| | ||| |||||||||||||| |||||||||||||| |  |  || || || |||||||| ||    
T  53328903 aacccccgaaaccgtaaagagtccttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtatgtgac 53328804  T
Q  173 agcatcacgaatcacattctc 193  Q
    |||||||||||||||||||||    
T  53328803 agcatcacgaatcacattctc 53328783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 193
Target Start/End: Original strand, 26358549 - 26358661
Alignment:
Q  81 aaaccatagagggttcttccctgtctcttcaaagcataaacaacatccatagcagtaacagtcttcctccttgcgtgttcagtgtatgtcacagcatcac 180  Q
    |||||||| ||||| ||||| || ||||| |  |||||||||||||||||||||||||| || || |  |  || ||||||||||| || ||||||||||    
T  26358549 aaaccataaagggtccttccttgcctcttgagcgcataaacaacatccatagcagtaactgttttgcgacgagcatgttcagtgtaagtgacagcatcac 26358648  T
Q  181 gaatcacattctc 193  Q
    |||| ||||||||    
T  26358649 gaataacattctc 26358661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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