View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8163_high_1 (Length: 988)
Name: NF8163_high_1
Description: NF8163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8163_high_1 |
 | |
|
| [»] scaffold0006 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 883; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 883; E-Value: 0
Query Start/End: Original strand, 15 - 969
Target Start/End: Original strand, 230104 - 231061
Alignment:
| Q |
15 |
atactctaaatttcaattttcactttaacaatattgacgaaatttggcacatctgtgatagaaggtggaaccctcagtgcaagatagtgatcaaagcagc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
230104 |
atactctaaatttcaattttcactttaacaatattgacgaaatttggcacatctgtgatagaaggtggaaccctcagtgcaagatagtgatcaaagcagc |
230203 |
T |
|
| Q |
115 |
catcatcaatgtcttatcaactatttggttttccaggaatac---tagattcaaagataaaacaatacattggaagagtgtcatttctttaatctcttct |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
230204 |
catcatcaatgtcttatcaactatttggttttccaggaatacaactagattcaaagataaaacaatacattggaagagtgccatttctttaatctcttct |
230303 |
T |
|
| Q |
212 |
aatgtagctttatctggtaacaactccaaagcttcatcaaactcatcaatgtcagatttttctatcatcaagaagttcagaattaatattcaccctccta |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
230304 |
aatgtagctttatctggtaacaactccaaagcttcatcaaactcatcaatgtcggatttttctatcatcaagaagttcagagttaatattcactctccta |
230403 |
T |
|
| Q |
312 |
gggctcctcagatcaaagaggtcatatggcatcctcctattagtcattggattaaaggacatacatatggttcatcttctgctttagcttctgcaagtgg |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
230404 |
gggctcctcagatcaaagaggtcatatggcatcctcctattagtcattggattaaaggaaatacatatggttcatcttctgctttagcttctgcaagtgg |
230503 |
T |
|
| Q |
412 |
tattatttttagaaactctgaagttgattatttactttgcatatctgaaaatcttggtatggtttctgcctttcatgctgaattaattggtgcaataaga |
511 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
230504 |
tattatttttagaaactctaaagctgattatttactttgcatatctgaaaatcttggtatggtttctgcctttcatgctgaattaattggtgcaataaga |
230603 |
T |
|
| Q |
512 |
gccatagagatagcttatcataagaattggttaaatttctggttgaaatctgattccatactagtggtgaatgctttctctaacaagagcatagttcctt |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
230604 |
gccatagagatagcttatcataagaattggttaaatttctggttgaaatctgattccatactagtggtgaatgctttctctaacaagagcatagttcctt |
230703 |
T |
|
| Q |
612 |
ggcacttaagcaatagatggcttaattgtatgaaacttttagctagcatgaattttgttatatctcatatttttagagaaggaaatcagtgtgctgattc |
711 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
230704 |
ggcacttaagcaatagatggcttaattgtatgaaacttttagctagcatgaattttgttatatctcatatttttagagaaggaaatcagtgtgctgattc |
230803 |
T |
|
| Q |
712 |
cgttgcaaactttggcttaacaattcaagaattgttttcttaggaatctgcttcatccttcatttctagctttttaattcaaaacaagttaggtatgcct |
811 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
230804 |
ccttgcaaactttggcttaacaattcaagaattgttttcttgggaatctgcttcatccttcatttctagctttttaattcaaaacaagttaggtatgcct |
230903 |
T |
|
| Q |
812 |
aactataagtttgtttcttcttgagggtttgatctatgttccccctctactttgtaatatctttttctttaaatggaattttggttgcagcaccatgttg |
911 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
230904 |
aactataagtttgtttcttcttgagggtttgatctatgttccccctctactttgtaatatttttttctttaaatggaattttggttgcagcaccatgttg |
231003 |
T |
|
| Q |
912 |
taacctttttgtttnnnnnnntaaatcaacacaaaataacttcagccactgatgaatt |
969 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
231004 |
taacctttttgtttaaaaaaataaatcaacacaaaataacttcagccactgatgaatt |
231061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 579; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 231 - 925
Target Start/End: Original strand, 12487951 - 12488645
Alignment:
| Q |
231 |
acaactccaaagcttcatcaaactcatcaatgtcagatttttctatcatcaagaagttcagaattaatattcaccctcctagggctcctcagatcaaaga |
330 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12487951 |
acaattccaaagcttcatcaaactcatcaatgtcggattttgctatcatcaagaagttcagagttaatattcaccctcctagggctcctcagatcaaaga |
12488050 |
T |
|
| Q |
331 |
ggtcatatggcatcctcctattagtcattggattaaaggacatacatatggttcatcttctgctttagcttctgcaagtggtattatttttagaaactct |
430 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12488051 |
ggtcatatggcaccctcctattagtcattggattaaaggaaatacagatggttcatcttctgctttagcttctgcaagtggtattatttttagaaactct |
12488150 |
T |
|
| Q |
431 |
gaagttgattatttactttgcatatctgaaaatcttggtatggtttctgcctttcatgctgaattaattggtgcaataagagccatagagatagcttatc |
530 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
12488151 |
gaagctgattgtttactttgcatatctgaaaatcttggtatggtttctgactttcatgctgaattaattggtgcaatgagagccatagagatagcttatc |
12488250 |
T |
|
| Q |
531 |
ataagaattggttaaatttctggttgaaatctgattccatactagtggtgaatgctttctctaacaagagcatagttccttggcacttaagcaatagatg |
630 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12488251 |
ataagaattggttaaatttctggttggaatctgactccatactagtggtgaatgctttctctaacaagagcatagttccttggcacttaagcaatagatg |
12488350 |
T |
|
| Q |
631 |
gcttaattgtatgaaacttttagctagcatgaattttgttatatctcatatttttagagaaggaaatcagtgtgctgattccgttgcaaactttggctta |
730 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
12488351 |
gcttaattgtatgaaactcttagctagcatgaattttgttgtatctcatatttttagagaaggaaatcagtgtgttgattcccttgcaaactttggctta |
12488450 |
T |
|
| Q |
731 |
acaattcaagaattgttttcttaggaatctgcttcatccttcatttctagctttttaattcaaaacaagttaggtatgcctaactataagtttgtttctt |
830 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
12488451 |
acaattcaaggattgttttcttgggaatctgctccatccttcatttctagctttttaattcaaaacaagttaggaatgcctaactataggtttgtttctt |
12488550 |
T |
|
| Q |
831 |
cttgagggtttgatctatgttccccctctactttgtaatatctttttctttaaatggaattttggttgcagcaccatgttgtaacctttttgttt |
925 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
12488551 |
cttgagggttttgtctatgtcccccctctactttgtaatttctttttctttcaatggaactttggttgcagcaccatgctgtaacctttttgttt |
12488645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 657 - 786
Target Start/End: Complemental strand, 19613011 - 19612882
Alignment:
| Q |
657 |
gcatgaattttgttatatctcatatttttagagaaggaaatcagtgtgctgattccgttgcaaactttggcttaacaattcaagaattgttttcttagga |
756 |
Q |
| |
|
||||||||||| | | |||||||| |||||| ||||||| || |||| |||||| ||| ||||||||||||||| | |||| ||||||| ||| ||| |
|
|
| T |
19613011 |
gcatgaattttatggtttctcatatctttagaaaaggaaaccaatgtgttgattctcttggaaactttggcttaaccttgcaaggattgtttacttggga |
19612912 |
T |
|
| Q |
757 |
atctgcttcatccttcatttctagcttttt |
786 |
Q |
| |
|
||| | | |||||||| ||||||| ||||| |
|
|
| T |
19612911 |
atcagttccatccttcctttctagattttt |
19612882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 658 - 759
Target Start/End: Complemental strand, 51657859 - 51657758
Alignment:
| Q |
658 |
catgaattttgttatatctcatatttttagagaaggaaatcagtgtgctgattccgttgcaaactttggcttaacaattcaagaattgttttcttaggaa |
757 |
Q |
| |
|
|||||||||||| || |||||||||| ||| ||||| || || |||||||||||| |||||||| | || || ||| ||| | ||||||||||||||| |
|
|
| T |
51657859 |
catgaattttgtgatttctcatatttatagggaagggaaccaatgtgctgattcccttgcaaacataggtttgacatctcatggtttgttttcttaggaa |
51657760 |
T |
|
| Q |
758 |
tc |
759 |
Q |
| |
|
|| |
|
|
| T |
51657759 |
tc |
51657758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 163; Significance: 2e-86; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 2e-86
Query Start/End: Original strand, 156 - 842
Target Start/End: Original strand, 21851089 - 21851775
Alignment:
| Q |
156 |
ctagattcaaagataaaacaatacattggaagagtgtcatttctttaatctcttctaatgtagctttatctggtaacaactccaaagcttcatcaaactc |
255 |
Q |
| |
|
|||||||||| |||||| ||| || |||||| || || |||||||| || || ||||| |||| |||||||||||||| ||||||| || || || |
|
|
| T |
21851089 |
ctagattcaaggataaacaaattcactggaagtctgcaatctctttaatttcctcaaatgtgactttgtctggtaacaactctaaagctttttctaattc |
21851188 |
T |
|
| Q |
256 |
atcaatgtcagatttttctatcatcaagaagttcagaattaatattcaccctcctagggctcctcagatcaaagaggtcatatggcatcctcctattagt |
355 |
Q |
| |
|
|| ||| | |||||| ||||||||||||||| ||| | || ||||| ||||| || || ||||||||||| ||||| | ||||| ||||| ||||| |
|
|
| T |
21851189 |
ttctatgactgattttgttatcatcaagaagtttagagtgaacattcatcctccaagagcccctcagatcaaggaggttttgtggcagcctcccattaga |
21851288 |
T |
|
| Q |
356 |
cattggattaaaggacatacatatggttcatcttctgctttagcttctgcaagtggtattatttttagaaactctgaagttgattatttactttgcatat |
455 |
Q |
| |
|
| ||||| |||||| | ||| |||| || || || || ||||||||| ||||| ||||| |||||| ||| | | | |||| | |||||||||| |
|
|
| T |
21851289 |
tactggatcaaaggaaacacagatggctcttcatcaaattcagcttctgctagtggcattatatttagagactttaatgcagattgcctgctttgcatat |
21851388 |
T |
|
| Q |
456 |
ctgaaaatcttggtatggtttctgcctttcatgctgaattaattggtgcaataagagccatagagatagcttatcataagaattggttaaatttctggtt |
555 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||| | |||||||| || |||||||| | ||||| || | || ||||| ||||| ||||| |
|
|
| T |
21851389 |
ctgaaaatcttggtatggtttctgctttccatgctgaattattgggtgcaatgagggccatagaaacagctttccaaagaaactggttgaatttttggtt |
21851488 |
T |
|
| Q |
556 |
gaaatctgattccatactagtggtgaatgctttctctaacaagagcatagttccttggcacttaagcaatagatggcttaattgtatgaaacttttagct |
655 |
Q |
| |
|
|||| || ||||| ||||||||||||| || || || | | ||| || |||||||| ||||| | ||||||| || |||||||| |||||| | |
|
|
| T |
21851489 |
agaatcagactccatgttagtggtgaatgccttttcaaatagtaacattgtgccttggcaattaagtactagatggtccaactgtatgaagcttttaaat |
21851588 |
T |
|
| Q |
656 |
agcatgaattttgttatatctcatatttttagagaaggaaatcagtgtgctgattccgttgcaaactttggcttaacaattcaagaattgttttcttagg |
755 |
Q |
| |
|
||||||||||||| |||||||| || |||||||||||||| || ||||| ||||| |||||||||||||| | |||||||||| ||||||||||| || |
|
|
| T |
21851589 |
ggcatgaattttgtaatatctcacatatttagagaaggaaaccaatgtgcagattctcttgcaaactttggcctgacaattcaaggattgttttcttggg |
21851688 |
T |
|
| Q |
756 |
aatctgcttcatccttcatttctagctttttaattcaaaacaagttaggtatgcctaactataagtttgtttcttcttgagggtttg |
842 |
Q |
| |
|
|||||||| |||||||||||||||| ||||| |||||||||||||||| ||||||||||||| |||||||| | ||||||||||| |
|
|
| T |
21851689 |
aatctgctccatccttcatttctagtttttttgttcaaaacaagttaggaatgcctaactatagatttgtttccttttgagggtttg |
21851775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 662 - 813
Target Start/End: Complemental strand, 11072813 - 11072662
Alignment:
| Q |
662 |
aattttgttatatctcatatttttagagaaggaaatcagtgtgctgattccgttgcaaactttggcttaacaattcaagaattgttttcttaggaatctg |
761 |
Q |
| |
|
||||||||| | | |||||| | ||||||| ||| ||||||||||||||| |||||||||||||||| || ||| ||| ||||||| |||||| | |
|
|
| T |
11072813 |
aattttgttgtttgtcatatatctagagaaataaaccagtgtgctgattcctttgcaaactttggcttgactccagaaggattattttcttgggaatcag |
11072714 |
T |
|
| Q |
762 |
cttcatccttcatttctagctttttaattcaaaacaagttaggtatgcctaa |
813 |
Q |
| |
|
|| |||||||| || |||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
11072713 |
ctccatccttccttactagttttttggttcaaaacaagttaggtatgcctaa |
11072662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 658 - 709
Target Start/End: Complemental strand, 40543990 - 40543939
Alignment:
| Q |
658 |
catgaattttgttatatctcatatttttagagaaggaaatcagtgtgctgat |
709 |
Q |
| |
|
|||||| ||| || ||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
40543990 |
catgaactttattgtatctcacatttttagggaaggaaatcagtgtgctgat |
40543939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 70658 - 70716
Alignment:
| Q |
41 |
aacaatattgacgaaatttggcacatctgtgatagaaggtggaaccctcagtgcaagat |
99 |
Q |
| |
|
|||||||| || || |||||||||||| |||||||| |||||| |||||||||||||| |
|
|
| T |
70658 |
aacaatatagaagatatttggcacatccgtgatagatggtggagtcctcagtgcaagat |
70716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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