View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8163_high_11 (Length: 310)
Name: NF8163_high_11
Description: NF8163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8163_high_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 4482618 - 4482909
Alignment:
| Q |
1 |
gtgtaaatcaagattgcacctgtagccagccacaagtcccaggtaaatggcttcataaacatccatgctgaatctttagacttcaatggaactatcatcg |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
4482618 |
gtgtaaatcaagattgcacctgtacccagccacaattcccaggtaaatggcttcataaacatccatgctgaatcttccgtcttcaatggaactatcatcg |
4482717 |
T |
|
| Q |
101 |
acaatcctgattctgcatatggcactgtaaaatccccatacctcaatctttcctctattatggtcgtgtcctcaacaaaagcgtcgtaagtcttccatca |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4482718 |
acaatcctgattctgcatatggcaatgtaaaatccacatacctcaatctttcctctattatggccgtgtccccaacaaaagcgtcgtaagtcttccatca |
4482817 |
T |
|
| Q |
201 |
ttgtttaaccacacataaacaaaaagtcccaatcaatatataaaaacaaatcaattctcaaaatagttaagttgcatttaatgccagttatt |
292 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4482818 |
ttgtttaaccaaacataaacaaaaagtcccaatcaataaataaaaaacaatcaattctcaaaatagttaagttgcatttaatgtcagttatt |
4482909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 4487597 - 4487836
Alignment:
| Q |
1 |
gtgtaaatcaagattgcacctgtagccagccacaagtcccaggtaaatggcttcataaacatccatgctgaatctttagacttcaatggaactatcatcg |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| || ||| ||||||||||||||||||||||||||||||| ||| || ||||| ||||||||||| | |
|
|
| T |
4487597 |
gtgtaaatcaagattgcacctgtaaccagccataattccaaggtaaatggcttcataaacatccatgctgactctccaggcttcatcggaactatcattg |
4487696 |
T |
|
| Q |
101 |
acaatcctgattctgcatatggcactgtaaaatccccatacctcaatctttcctctattatggtcgtgtcctcaacaaaagcgtcgtaagtcttccatca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||| ||||| |||||| ||| || |||||||||||||| |
|
|
| T |
4487697 |
acaatcctgattctgcatatggcactgtaaaatccacatacggcaacctttcctctattatggtcatgtccccaacaacagcatcataagtcttccatca |
4487796 |
T |
|
| Q |
201 |
ttgtttaaccacacataaacaaaaagtcccaatcaatata |
240 |
Q |
| |
|
||||||| ||||| |||||||| || ||| |||||||||| |
|
|
| T |
4487797 |
ttgtttagccacatataaacaacaattccaaatcaatata |
4487836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 39 - 134
Target Start/End: Complemental strand, 34606505 - 34606410
Alignment:
| Q |
39 |
ccaggtaaatggcttcataaacatccatgctgaatctttagacttcaatggaactatcatcgacaatcctgattctgcatatggcactgtaaaatc |
134 |
Q |
| |
|
|||||| || ||||||||||||||||||||||| |||| ||||||| | ||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
34606505 |
ccaggtgaagggcttcataaacatccatgctgattcttcagacttctccgtaactatcatcgacaatcctgactctgcatatggcacagtaaaatc |
34606410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University