View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8163_high_16 (Length: 275)
Name: NF8163_high_16
Description: NF8163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8163_high_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 12 - 257
Target Start/End: Original strand, 9019093 - 9019338
Alignment:
| Q |
12 |
cgttatctgtgggccctacgcgtttctccaatcttataaatactcccaccacttattcaacatacataacttgcacaactactcctttgcttcacaattt |
111 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9019093 |
cgttatctgtgggccccacgtgtttctccaatcttataaatactcccatcacttattcaacatacataacttgcacaactactcctttgcttcacaattt |
9019192 |
T |
|
| Q |
112 |
tcattttcaacatcctctacttcacaattcaccaatggcatcatcagctactacaatgaagttcttctctttcttttttgttgtcttcgtggctgctgtg |
211 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
9019193 |
tcattttcaacttcctctacttcacaatttaccaatggcatcatcagctactacaatgaagttcttctctttcttttttgttgtctttgtggctgttgtg |
9019292 |
T |
|
| Q |
212 |
gcctcggctcaagacctcggtccctcgtccgctccggcaccaggtc |
257 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
9019293 |
gcctcggctcaagaccttagtccctcatccgctccggcaccaggtc |
9019338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 257
Target Start/End: Original strand, 9015357 - 9015473
Alignment:
| Q |
144 |
caatggcatcatcagctactacaatgaagttcttctctttcttttttgttgtcttcgtggctg---ctgtggcctcggctcaagacctcggtccctcgtc |
240 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| |||||||| || | | | |||||| || | |||||||||||||||||| | ||||||| |
|
|
| T |
9015357 |
caatggcatcatcagctacaacaatgaaattcttctccttctttttcgtcgccatgttggctgcctctatcgcctcggctcaagacctcagcccctcgtt |
9015456 |
T |
|
| Q |
241 |
cgctccggcaccaggtc |
257 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
9015457 |
gtctccggcaccaggtc |
9015473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 8755362 - 8755410
Alignment:
| Q |
12 |
cgttatctgtgggccctacgcgtttctccaatcttataaatactcccac |
60 |
Q |
| |
|
|||||| ||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
8755362 |
cgttatttgtgggccccacgcgtttcaccaatcttataaatactcccac |
8755410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 254
Target Start/End: Original strand, 8755536 - 8755628
Alignment:
| Q |
165 |
caatgaagttcttctctttcttttt---tgttgtcttcgtggctgctgtggcctcggctcaagacctcggtccctcgtccgctccggcaccag |
254 |
Q |
| |
|
|||||||||| ||| | |||||||| ||||||||||| || || ||||| ||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
8755536 |
caatgaagtttttcgccttctttttcgttgttgtcttcgcagcagccgtggcttcggctcaagacctcagtccctcgttggctccggcaccag |
8755628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University