View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8163_high_20 (Length: 247)
Name: NF8163_high_20
Description: NF8163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8163_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 11 - 231
Target Start/End: Original strand, 4243562 - 4243782
Alignment:
| Q |
11 |
acatcatcgaaactagtctttctaccgttgaactctctaactccgttatcagtctttgtgttcccggtgaaatatcgaatcaacagaacaacaaggacta |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243562 |
acatcatcgaaactagtctttctaccgttgaactctctaactccgttatcagtctttgtgttcccggtgaaatatcgaatcaacagaacaacaaggacta |
4243661 |
T |
|
| Q |
111 |
aaaatgcgacagccaaaccaacctttccgattgaggatgtaagtttattcaaccttgtttgcaaaggggtttcttcgttgatgtcattgcttatggaact |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243662 |
aaaatgcgacagccaaaccaacctttccgattgaggatgtaagtttattcaaccttgtttgcaaaggggtttcttcgttgatgtcattgcttatggaact |
4243761 |
T |
|
| Q |
211 |
catcatttgtccccatgttgt |
231 |
Q |
| |
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||||||||||||||||||||| |
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| T |
4243762 |
catcatttgtccccatgttgt |
4243782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 11 - 231
Target Start/End: Original strand, 6186618 - 6186838
Alignment:
| Q |
11 |
acatcatcgaaactagtctttctaccgttgaactctctaactccgttatcagtctttgtgttcccggtgaaatatcgaatcaacagaacaacaaggacta |
110 |
Q |
| |
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|||||||| ||||| ||||||||||| ||||| |||||||||||| |||||||||||| ||||||||||||||||||| ||| |||||||| ||||||| |
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| T |
6186618 |
acatcatcaaaactcgtctttctaccattgaattctctaactccggcatcagtctttgtattcccggtgaaatatcgaaccaagagaacaaccaggacta |
6186717 |
T |
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| Q |
111 |
aaaatgcgacagccaaaccaacctttccgattgaggatgtaagtttattcaaccttgtttgcaaaggggtttcttcgttgatgtcattgcttatggaact |
210 |
Q |
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|||| |||||| |||||||||| |||||||| || ||||| || ||||||||||||||||||||||| ||||| || | ||||||||||||||| ||||| |
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| T |
6186718 |
aaaacgcgacaaccaaaccaacttttccgatcgatgatgttagcttattcaaccttgtttgcaaaggtgtttcctcatcgatgtcattgcttatcgaact |
6186817 |
T |
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| Q |
211 |
catcatttgtccccatgttgt |
231 |
Q |
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||||||||||||||||||||| |
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| T |
6186818 |
catcatttgtccccatgttgt |
6186838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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