View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8163_high_23 (Length: 225)
Name: NF8163_high_23
Description: NF8163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8163_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 43150605 - 43150816
Alignment:
| Q |
1 |
actgtggaacatcaatacttcaaagtcaattaagaaaacatataaactcatccaaccatattaatgtgacatatgtatgcataagacttactactatata |
100 |
Q |
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| T |
43150605 |
actgtggaacatcaatacttcaaagtcaattaagaaaacatataaactcatccaaccatattaatgtgacatatgtatgcataagacttactactatata |
43150704 |
T |
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| Q |
101 |
gttctagcattatagcttgttcatgagaataggcactgttcattaattcaaagtcaataaaaaacgtacataatataatgtgtttgatatacgttcatgt |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
43150705 |
gttctagcataatagcttgttcatgagaataggcactgttcattaattcaaagtcaataaaaaacgtac-----ataatgtgtttgatatacgttcatgt |
43150799 |
T |
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| Q |
201 |
atatgctggttcatctc |
217 |
Q |
| |
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||||||||||||||||| |
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| T |
43150800 |
atatgctggttcatctc |
43150816 |
T |
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