View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8163_high_5 (Length: 544)
Name: NF8163_high_5
Description: NF8163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8163_high_5 |
 | |
|
| [»] scaffold0187 (6 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 37 - 399
Target Start/End: Original strand, 37911470 - 37911841
Alignment:
| Q |
37 |
cttcaatactactttctagtcactaaggctaattaatattctcactctcaccaaccaaagagtctaccaccctctacctcagtagtaaaatgggaggaaa |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37911470 |
cttcaatactactttctagtcactaaggctaattaatattctcattctcaccaaccaaagagtctaccaccctctacctcagtagtaaaatgggaggaaa |
37911569 |
T |
|
| Q |
137 |
caacaatcagaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaa---------gagggtattat |
227 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
37911570 |
caacaatcaaaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagaggaggaggagggtattat |
37911669 |
T |
|
| Q |
228 |
tatgataatgcttcatatgataacaaagtgtggccaagtgatgaagacagaggcagttggggtgtagctgatcctgttattgacataagagctacagcat |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
37911670 |
tatgataatgcttcatatgataacaaagtgtggccaagtgatgaagacagaggtagttggggtgtagctgatcctgttattgacatgagagctacagcat |
37911769 |
T |
|
| Q |
328 |
tcattgctcaatacaagaaacgtatttctgaatctcaaattcactggcaagctcaacctgatcagtaggata |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
37911770 |
tcattgctcaatacaagaaacgtatttctgaatctcaaattcattgccaagctcaacctgatcagtaggata |
37911841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 2 - 405
Target Start/End: Original strand, 37881495 - 37881902
Alignment:
| Q |
2 |
ttcagattgtaacacaagacaatcactgttcctttcttcaatactactttctagtcactaaggctaattaatattctcactctcaccaaccaaagagtct |
101 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
37881495 |
ttcagattgtaacacaagacaaacacacttcctttcttcaatactactttctagtcaccaaggataattaatattctcactctcaccaaccaaagagtc- |
37881593 |
T |
|
| Q |
102 |
accaccctctacctcagtagtaaaatgggaggaaacaacaatcagaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatcta |
201 |
Q |
| |
|
||||| || ||| | | |||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37881594 |
accactctatac-taactagtgaaatgggaggaaacag---tcaaaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatcta |
37881689 |
T |
|
| Q |
202 |
gcagtaacaagcaaagagg---------gtattattatgataatgcttcatatgataacaaagtgtggccaagtgatgaagacagaggcagttggggtgt |
292 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
37881690 |
gcagtaacaagcaaagaggaggaggagggtattattatgataatgcttcatatgataacaaagtgtggccaagtgatgaagacagaggtagttggggtgt |
37881789 |
T |
|
| Q |
293 |
agctgatcctgttattgacataagagctacagcattcattgctcaatacaagaaacgtatttctgaatctcaaattcactggcaagctcaacctgatcag |
392 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
37881790 |
agctgatcctgttattgacatgagagctacagcattcattgctcaatacaagaaacgtatttctgaatctcaaattcattgccaagctcaacctgatcag |
37881889 |
T |
|
| Q |
393 |
taggatacgaaca |
405 |
Q |
| |
|
||||||||||||| |
|
|
| T |
37881890 |
taggatacgaaca |
37881902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 78 - 399
Target Start/End: Original strand, 37867531 - 37867856
Alignment:
| Q |
78 |
tcactctcaccaaccaaagagtctaccaccctctacctcagtagtaaaatgggaggaaacaacaatcagaggaagtcatctaaatcatcatcattcaggt |
177 |
Q |
| |
|
||||||||||||||||||| ||| ||||| || ||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
37867531 |
tcactctcaccaaccaaagtgtc-accactctatac-tcagtagtaaaatgggaggaaacaa---tcaaaggaagtcatctaaatcatcatcattcaggt |
37867625 |
T |
|
| Q |
178 |
cagttttcaacatattcaaatctagcagtaacaagcaaagagg---------gtattattatgataatgcttcatatgataacaaagtgtggccaagtga |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37867626 |
cagttttcaacatattcaaatctagcagtaacaagcaaagaggaggaggagggtattattatgataatgcttcatatgataacaaagtgtggccaagtga |
37867725 |
T |
|
| Q |
269 |
tgaagacagaggcagttggggtgtagctgatcctgttattgacataagagctacagcattcattgctcaatacaagaaacgtatttctgaatctcaaatt |
368 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37867726 |
tgaagacagaggtagttggggtgtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaagaaacgtatttctgaatctcaaatt |
37867825 |
T |
|
| Q |
369 |
cactggcaagctcaacctgatcagtaggata |
399 |
Q |
| |
|
|| || ||||||||||||||||||||||||| |
|
|
| T |
37867826 |
cattgccaagctcaacctgatcagtaggata |
37867856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 138 - 399
Target Start/End: Original strand, 37855398 - 37855668
Alignment:
| Q |
138 |
aacaatcagaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagagg---------gtattatt |
228 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37855398 |
aacaatcaaaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagaggaggaggagggtattatt |
37855497 |
T |
|
| Q |
229 |
atgataatgcttcatatgataacaaagtgtggccaagtgatgaagacagaggcagttggggtgtagctgatcctgttattgacataagagctacagcatt |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37855498 |
atgataatgcttcatatgataacaaagtgtggccaagtgatgaagacagaggtagttggggtgtagctgatcctgttattgacatgagagctacagcatt |
37855597 |
T |
|
| Q |
329 |
cattgctcaatacaagaaacgtatttctgaatctcaaattcactggcaagctcaacctgatcagtaggata |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
37855598 |
cattgctcaatacaagaaacgtatttctgaatctcaaattcattgccaagctcaacctgatcagtaggata |
37855668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 443 - 534
Target Start/End: Original strand, 37881940 - 37882032
Alignment:
| Q |
443 |
tctctgatgtaattagttattgattatcatttgtgaactatgccaattaatgtaaatatgaataatcttt-aagtttattctttcttgatgtc |
534 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
37881940 |
tctctgttgtaattagttattgattatcatttgtgaaccatgccaagtaatgtaaatatgaataatctttcaagtttattctttcttcatgtc |
37882032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 444 - 512
Target Start/End: Original strand, 37911890 - 37911958
Alignment:
| Q |
444 |
ctctgatgtaattagttattgattatcatttgtgaactatgccaattaatgtaaatatgaataatcttt |
512 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
37911890 |
ctctgttgtaattagttattgattatcatttgtgaaccatgccaagtaatgtaaatatgaataatcttt |
37911958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187 (Bit Score: 312; Significance: 1e-175; HSPs: 6)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 37 - 399
Target Start/End: Complemental strand, 27607 - 27236
Alignment:
| Q |
37 |
cttcaatactactttctagtcactaaggctaattaatattctcactctcaccaaccaaagagtctaccaccctctacctcagtagtaaaatgggaggaaa |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27607 |
cttcaatactactttctagtcactaaggctaattaatattctcattctcaccaaccaaagagtctaccaccctctacctcagtagtaaaatgggaggaaa |
27508 |
T |
|
| Q |
137 |
caacaatcagaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaa---------gagggtattat |
227 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27507 |
caacaatcaaaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagaggaggaggagggtattat |
27408 |
T |
|
| Q |
228 |
tatgataatgcttcatatgataacaaagtgtggccaagtgatgaagacagaggcagttggggtgtagctgatcctgttattgacataagagctacagcat |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
27407 |
tatgataatgcttcatatgataacaaagtgtggccaagtgatgaagacagaggtagttggggtgtagctgatcctgttattgacatgagagctacagcat |
27308 |
T |
|
| Q |
328 |
tcattgctcaatacaagaaacgtatttctgaatctcaaattcactggcaagctcaacctgatcagtaggata |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||| |
|
|
| T |
27307 |
tcattgctcaatacaagaaacgtatttctgaatctcaaattcattgccaaggtcaacctgatcagtaggata |
27236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 119 - 408
Target Start/End: Complemental strand, 6860 - 6571
Alignment:
| Q |
119 |
tagtaaaatgggaggaaacaacaatcagaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaaga |
218 |
Q |
| |
|
|||| |||||||||||||||| ||| |||||||| ||||||||||||| ||||||| ||||||||||| || |||||||| ||||||||||||||| |
|
|
| T |
6860 |
tagtgaaatgggaggaaacaa---tcaaaggaagtcttctaaatcatcat---tcaggtctgttttcaacatttttaaatctagtagtaacaagcaaaga |
6767 |
T |
|
| Q |
219 |
gggt------attattatgataatgcttcatatgataacaaagtgtggccaagtgatgaagacagaggcagttggggtgtagctgatcctgttattgaca |
312 |
Q |
| |
|
|| | ||||||||| ||| | | |||| ||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6766 |
ggtggaggagagtattatgatcatggtgcttatgctaacaaagtatggccaagtgatgaagatagaggaagttggggtgtagctgatcctgttattgaca |
6667 |
T |
|
| Q |
313 |
taagagctacagcattcattgctcaatacaagaaacgtatttctgaatctcaaattcactggcaagctcaacctgatcagtaggatacgaacaatc |
408 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
6666 |
tgagagctacagcattcattgctcaatacaagaaacgaatttctgaatctcaaattcattgccaagctcaacctgatcagtaggatacgaacaatc |
6571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 119 - 399
Target Start/End: Complemental strand, 17188 - 16908
Alignment:
| Q |
119 |
tagtaaaatgggaggaaacaacaatcagaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaaga |
218 |
Q |
| |
|
|||| |||||||||||||||| ||| |||||||| ||||||||||||| ||||||| ||||||||||| || |||||||| ||||||||||||||| |
|
|
| T |
17188 |
tagtgaaatgggaggaaacaa---tcaaaggaagtcttctaaatcatcat---tcaggtctgttttcaacatttttaaatctagtagtaacaagcaaaga |
17095 |
T |
|
| Q |
219 |
gggt------attattatgataatgcttcatatgataacaaagtgtggccaagtgatgaagacagaggcagttggggtgtagctgatcctgttattgaca |
312 |
Q |
| |
|
|| | ||||||||| ||| | | |||| ||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
17094 |
ggtggaggagagtattatgatcatggtgcttatgctaacaaagtatggccaagtgatgaagatagaggaagttggggtgtagctgatcctgttattgaca |
16995 |
T |
|
| Q |
313 |
taagagctacagcattcattgctcaatacaagaaacgtatttctgaatctcaaattcactggcaagctcaacctgatcagtaggata |
399 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
16994 |
tgagagctacagcattcattgctcaatacaagaaacgtatttctgaatctcaaattcattgccaagctcaacctgatcagtaggata |
16908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #4
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 2 - 176
Target Start/End: Complemental strand, 177 - 1
Alignment:
| Q |
2 |
ttcagattgtaacacaagacaatc--actgttcctttcttcaatactactttctagtcactaaggctaattaatattctcactctcaccaaccaaagagt |
99 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
177 |
ttcagattgtaacacaagacaacacaacacttcctttcttcaatactactttctagtcactaaggctaattaatattctcactctcaccaaccaaagagt |
78 |
T |
|
| Q |
100 |
ctaccaccctctacctcagtagtaaaatgggaggaaacaacaatcagaggaagtcatctaaatcatcatcattcagg |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
77 |
ctaccaccctctacctcagtagtaaaatgggaggaaacaacaatcagaggaagtcatctaaatcatcatcattcagg |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 444 - 528
Target Start/End: Complemental strand, 6533 - 6448
Alignment:
| Q |
444 |
ctctgatgtaattagttattgattatcatttgtgaactatgccaattaatgtaaatatgaataatcttt-aagtttattctttctt |
528 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||| ||||||||||| |||| |
|
|
| T |
6533 |
ctctgttgtaattagttattgattatcatttgtgaaccatgccaagtaatgtaaatatgaataacctttcaagtttattctctctt |
6448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 460 - 534
Target Start/End: Complemental strand, 27170 - 27094
Alignment:
| Q |
460 |
tattgattatcatttgtgaactatgccaattaatg-taaatatgaataatcttt-aagtttattctttcttgatgtc |
534 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||| | |||||||||||| ||| | ||||||||| |||| ||||| |
|
|
| T |
27170 |
tattgattatcatttgtaaactatgataattaatgtttaatatgaataatatttcatgtttattctctcttaatgtc |
27094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 78 - 277
Target Start/End: Complemental strand, 9239873 - 9239670
Alignment:
| Q |
78 |
tcactctcaccaaccaaagagtctaccaccctctacctcagtagtaaaatgggaggaaacaacaatcagaggaagtcatctaaatcatcatcattcaggt |
177 |
Q |
| |
|
||||||||||||||||||||||| |||| || ||| || |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9239873 |
tcactctcaccaaccaaagagtcg-ccactctatac-tcggtagtaaaatgggaggaaacaa---tcaaaggaagtcatctaaatcatcatcattcaggt |
9239779 |
T |
|
| Q |
178 |
cagttttcaacatattcaaatctagcagtaacaagcaaa---------gagggtattattatgataatgcttcatatgataacaaagtgtggccaagtga |
268 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9239778 |
cagttttcaacatattcaaatctagcaataacaagcaaagaggaggaggagggtattattatgataatgcttcatatgataacaaagtgtggcctagtga |
9239679 |
T |
|
| Q |
269 |
tgaagacag |
277 |
Q |
| |
|
||||||||| |
|
|
| T |
9239678 |
tgaagacag |
9239670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 258 - 346
Target Start/End: Complemental strand, 45759409 - 45759321
Alignment:
| Q |
258 |
tggccaagtgatgaagacagaggcagttggggtgtagctgatcctgttattgacataagagctacagcattcattgctcaatacaagaa |
346 |
Q |
| |
|
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| T |
45759409 |
tggcctagtgatgaagacaaaggtacatggggggtagctgatcctgttattgacatgagagctacagcttttattgctcgatacaagaa |
45759321 |
T |
|
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