View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8163_high_6 (Length: 536)
Name: NF8163_high_6
Description: NF8163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8163_high_6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 536
Target Start/End: Original strand, 3815400 - 3815935
Alignment:
| Q |
1 |
gcatgatagagcttgtgatcctggtcccaatggacaacagctacgtacttatagaactgcttctgttactgtctttgccaactatttctctgcaaagaat |
100 |
Q |
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| T |
3815400 |
gcatgatagagcttgtgatcctggtcccaatggacaacagctacgtacttatagaactgcttctgttactgtctttgccaactatttctctgcaaagaat |
3815499 |
T |
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| Q |
101 |
atcaccttcaaggtaaatattagtatatctgttaatatattgctgtttttactatcgcttatcggtaaatattttaactgataattaacctcaatgagac |
200 |
Q |
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| T |
3815500 |
atcaccttcaaggtaaatattagtatatctgttaatatattgctgtttttactatcgcttatcggtaaatattttaactgataattaacctcaatgagac |
3815599 |
T |
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| Q |
201 |
aaagggaggaaggaactattgtacggcatgtgttgtcactacctaccaatattgtcattgtaaaatatagctatatatctcgtgatcttgcacttgnnnn |
300 |
Q |
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| T |
3815600 |
aaagggaggaaggaactattgtacggcatgtgttgtcactacctaccaatattgtcattgtaaaatatagctatatatctcgtgatcttgcacttgtttt |
3815699 |
T |
|
| Q |
301 |
nnnctgnnnnnnntaaattttgataagattcaaaataagaagttccaatttctttcattacaatgtcttagtggaacataagtgacaaaagtgtcaattt |
400 |
Q |
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||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3815700 |
tttctg-aaaaaataaattttgataagattcaaaataagaagttctaatttctttcatttcaatgtcttagtggaacataagtgacaaaagtgtcaattt |
3815798 |
T |
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| Q |
401 |
tttaacttctctatcttagcaactttttaacttagct-nnnnnnnnnnnntttgttgaataatcattctatttttggcaaagagttgagaataagaaact |
499 |
Q |
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| T |
3815799 |
tttaacttctctatcttagcaactttttaacttagctaaaaaaaaaaaaaattgttgaataatcattccctttttggcaaagagttgagaataagaaact |
3815898 |
T |
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| Q |
500 |
aataaagcaagaaatgaatggtgagcatgcagaatac |
536 |
Q |
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| T |
3815899 |
aataaagcaagaaatgaatggtgagcatgcagaatac |
3815935 |
T |
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