View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8163_high_8 (Length: 425)
Name: NF8163_high_8
Description: NF8163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8163_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 49221869 - 49222045
Alignment:
| Q |
17 |
agaaagaagaatgggccagggagagaaacaagaaaacactacaggaataaaaatatttaaattcaacaaaaatggtttttgagatgttnnnnnnnccaac |
116 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
49221869 |
agaaagaagaatgggtcagggagagaaacaagaaaacactacaggaatcaaaaaatttaaattcaacaaaaatggtttttgagatgttaaaaaaaccaac |
49221968 |
T |
|
| Q |
117 |
atgccagcacaagaccgtatctcaacacaactacctattctacaacctaaacccaagtgttcaaaagcgacaaattg |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
49221969 |
atgccagcacaagaccgtatctcaacacaactacctattctacaacctaaactcaagtgttcaaacacgacaaattg |
49222045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 313 - 411
Target Start/End: Original strand, 40739494 - 40739592
Alignment:
| Q |
313 |
ttgattcatggattcaattgttgttgttgttgattcatggattcaatcaatttcatttgggtttgaggattttcttatagatttaatcaattgttgttt |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
40739494 |
ttgattcatggattcaattgttgttgttgttgattcatggattcaatcaatttcatttgggtttgaggattttcttatggatttaatcaattgttgttt |
40739592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 313 - 411
Target Start/End: Complemental strand, 6241836 - 6241738
Alignment:
| Q |
313 |
ttgattcatggattcaattgttgttgttgttgattcatggattcaatcaatttcatttgggtttgaggattttcttatagatttaatcaattgttgttt |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6241836 |
ttgattcatggattcaattgttgttgttgttgattcatggattcaatcaatttcatttgggtttgaggattttcttatggatttaatcaattgttgttt |
6241738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 313 - 411
Target Start/End: Original strand, 29466708 - 29466806
Alignment:
| Q |
313 |
ttgattcatggattcaattgttgttgttgttgattcatggattcaatcaatttcatttgggtttgaggattttcttatagatttaatcaattgttgttt |
411 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
29466708 |
ttgattcatagattcaattgttgttgttgttgattcatggattcaatcaatttcatttgggtttgaggattttcttatggatttaatcaattgttgttt |
29466806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 313 - 411
Target Start/End: Complemental strand, 3604119 - 3604018
Alignment:
| Q |
313 |
ttgattcatggattcaattgttgttgttgttg---attcatggattcaatcaatttcatttgggtttgaggattttcttatagatttaatcaattgttgt |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3604119 |
ttgattcatggattcaattgttgttgttgttgttgattcatggattcaatcaatttcatttgggtttgaggattttcttatggatttaatcaattgttgt |
3604020 |
T |
|
| Q |
410 |
tt |
411 |
Q |
| |
|
|| |
|
|
| T |
3604019 |
tt |
3604018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University