View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8163_high_9 (Length: 350)
Name: NF8163_high_9
Description: NF8163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8163_high_9 |
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| [»] scaffold0187 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 334
Target Start/End: Original strand, 37881230 - 37881546
Alignment:
| Q |
18 |
cttataccttcacaaatgtgcatcattgaataagaaacacattcaacatcaatcacacgactaatcaagtctagaaagaaaccatcggaccacaaaaaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37881230 |
cttataccttcacaaatgtgcatcattgaataagaaacacattcaacaccaatcacacgactaatcaagtctagaaagaaaccatcggaccacaaaaaat |
37881329 |
T |
|
| Q |
118 |
gtacctagtccaaaagttgaatgataatttaatgttccacatgagtttgtttaaaccaagaatattgaactcacctcaatgggttgaatcagattccctc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37881330 |
gtacctagtccaaaagttgaatgataatttaatgttccacatgagtttgtttaaaccaagaatattgaactcacctcaatgggttgaatcagattccctc |
37881429 |
T |
|
| Q |
218 |
tgtcttagtttaacaaaagggtgtttatgagtaattagtactatataaattaagactccctagctttcagattgtaacacaagacaaacacacttccttt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37881430 |
tgtcttagtttaacaaaagggtgtttatgagtaattagtactatataaattaagactccctagctttcagattgtaacacaagacaaacacacttccttt |
37881529 |
T |
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| Q |
318 |
cttcaatactactttct |
334 |
Q |
| |
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||||||||||||||||| |
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| T |
37881530 |
cttcaatactactttct |
37881546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 166 - 316
Target Start/End: Original strand, 37855174 - 37855324
Alignment:
| Q |
166 |
gtttaaaccaagaatattgaactcacctcaatgggttgaatcagattccctctgtcttagtttaacaaaa-gggtgtttatgagtaattagtactatata |
264 |
Q |
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|||| ||||| |||||||| ||||||| || | | |||||||||||||||| |||||||||||||||||| ||||||||| | |||||||||||||||| |
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| T |
37855174 |
gtttgaaccatgaatattggactcaccccagttgtttgaatcagattccctttgtcttagtttaacaaaaggggtgtttagtaataattagtactatata |
37855273 |
T |
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| Q |
265 |
aattaagactccctagctttcagattgtaacacaagacaaacacacttcctt |
316 |
Q |
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| T |
37855274 |
aattgagaccccctagcttccaagttgtagcacaaca-taacacacttcctt |
37855324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 96 - 334
Target Start/End: Original strand, 37911253 - 37911486
Alignment:
| Q |
96 |
aaaccatcggaccacaaaaaatgtacctagtccaaaagttgaatgataatttaatgttccacatgagtttgtttaaaccaa--gaatattgaactcacct |
193 |
Q |
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|||| ||||| ||||| |||||| |||| |||||| ||||||| |||||||| |||||| ||| |||||||||||| |||||||| | |||| |
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| T |
37911253 |
aaactatcgggccacagaaaatgcaccttttccaaa-gttgaatcataatttacagttccatgtgatcttgtttaaaccataggaatattggagacaccc |
37911351 |
T |
|
| Q |
194 |
caatgggttgaatcagattccctctgtcttagtttaacaaaagggt-gtttatgagtaattagtactatataaattaagactccctagctttcagattgt |
292 |
Q |
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|| ||| |||||||||||||| | ||||| |||||||||||| ||| |||||| |||||||||||||||||| |||| |||||||||||| |||| |
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| T |
37911352 |
cagtggtttgaatcagattcctt-tgtctaagtttaacaaaaaggttgtttat----aattagtactatataaatatagaccccctagctttcaatttgt |
37911446 |
T |
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| Q |
293 |
aacacaagacaaacacacttcctttcttcaatactactttct |
334 |
Q |
| |
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| T |
37911447 |
agcacaacacaa--gcacttctttccttcaatactactttct |
37911486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 156
Target Start/End: Original strand, 37854786 - 37854913
Alignment:
| Q |
29 |
acaaatgtgcatcattgaat-aagaaacacattcaacatcaatcacacgactaatcaagtctagaaagaaaccatcggaccacaaaaaatgtacctagtc |
127 |
Q |
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||||||||||| ||||||| || ||||||| ||||| |||||||| ||||| ||||||| || ||||||||||||| ||||| ||||||||||| || |
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| T |
37854786 |
acaaatgtgcaccattgaacgaaaaaacacaaccaacaccaatcacatgacta-tcaagtcaagcaagaaaccatcgggccacataaaatgtaccttttc |
37854884 |
T |
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| Q |
128 |
caaaagttgaatgataatttaatgttcca |
156 |
Q |
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||||||||||| |||||| | ||||||| |
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| T |
37854885 |
taaaagttgaatcataattcactgttcca |
37854913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187 (Bit Score: 94; Significance: 8e-46; HSPs: 4)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 125 - 334
Target Start/End: Complemental strand, 334 - 124
Alignment:
| Q |
125 |
gtccaaaagttgaatgataatttaatgttccacatgagtttgtttaaaccaagaatattgaactcacctcaatgggttgaatcagattccctctgtctta |
224 |
Q |
| |
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||||||||||||||| |||||||| ||||||| ||| |||||||||||| |||||||| ||||||| | ||| ||||||| |||||| | ||||| |
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| T |
334 |
gtccaaaagttgaatcataatttactgttccatgtgaacttgtttaaaccatgaatattggactcaccctagtggtttgaatccgattcctt--gtcttt |
237 |
T |
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| Q |
225 |
gtttaacaaaa-gggtgtttatgagtaattagtactatataaattaagactccctagctttcagattgtaacacaagacaa-ac-acacttcctttcttc |
321 |
Q |
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||||||||||| ||||||||| ||||||| |||||||||||| | |||| |||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
236 |
gtttaacaaaaagggtgtttagtagtaattggtactatataaactgagaccccctagctttcagattgtaacacaagacaacacaacacttcctttcttc |
137 |
T |
|
| Q |
322 |
aatactactttct |
334 |
Q |
| |
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||||||||||||| |
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| T |
136 |
aatactactttct |
124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 283
Target Start/End: Complemental strand, 7193 - 6936
Alignment:
| Q |
36 |
tgcatcattgaataagaaacacattcaacatcaatcacacgactaatcaagtctag-aaagaaaccatcggaccacaaa----aaatgtacctagtccaa |
130 |
Q |
| |
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|||||||||||| | ||||||| ||| | |||||||| || ||||||||| || |||||||| ||||| ||||| | |||||||||| | ||| |
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| T |
7193 |
tgcatcattgaaagaaaaacacaaccaaaaccaatcacataacaaatcaagtcaagcaaagaaacaatcgggccacatatataaaatgtaccttttgcaa |
7094 |
T |
|
| Q |
131 |
aagttgaatgataatttaatgttccacatgagtttgtttaaaccaagaatattgaactcacctcaatgggttgaatcagattccctctgtcttagtttaa |
230 |
Q |
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|||||| || |||||||| |||||| ||| |||||||||||| |||||||| ||||||| | ||| |||||||||||||| | ||||||||||||| |
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| T |
7093 |
aagttgtatcataatttacagttccatgtgatcttgtttaaaccatgaatattggactcaccctagtggtttgaatcagattccttttgtcttagtttaa |
6994 |
T |
|
| Q |
231 |
c-aaaagggtgttta-tgagtaa---ttagtactatataaattaagactccctagctt |
283 |
Q |
| |
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| ||||||||||||| | ||||| ||||||||||||||| | |||| ||||||||| |
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| T |
6993 |
caaaaagggtgtttagttagtaatagttagtactatataaactgagaccccctagctt |
6936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 283
Target Start/End: Complemental strand, 17521 - 17264
Alignment:
| Q |
36 |
tgcatcattgaataagaaacacattcaacatcaatcacacgactaatcaagtctag-aaagaaaccatcggaccacaaa----aaatgtacctagtccaa |
130 |
Q |
| |
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|||||||||||| | ||||||| ||| | |||||||| || ||||||||| || |||||||| ||||| ||||| | |||||||||| | ||| |
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| T |
17521 |
tgcatcattgaaagaaaaacacaaccaaaaccaatcacataacaaatcaagtcaagcaaagaaacaatcgggccacatatataaaatgtaccttttgcaa |
17422 |
T |
|
| Q |
131 |
aagttgaatgataatttaatgttccacatgagtttgtttaaaccaagaatattgaactcacctcaatgggttgaatcagattccctctgtcttagtttaa |
230 |
Q |
| |
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|||||| || |||||||| |||||| ||| |||||||||||| |||||||| ||||||| | ||| |||||||||||||| | ||||||||||||| |
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| T |
17421 |
aagttgtatcataatttacagttccatgtgatcttgtttaaaccatgaatattggactcaccctagtggtttgaatcagattccttttgtcttagtttaa |
17322 |
T |
|
| Q |
231 |
c-aaaagggtgttta-tgagtaa---ttagtactatataaattaagactccctagctt |
283 |
Q |
| |
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| ||||||||||||| | ||||| ||||||||||||||| | |||| ||||||||| |
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| T |
17321 |
caaaaagggtgtttagttagtaatagttagtactatataaactgagaccccctagctt |
17264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 96 - 334
Target Start/End: Complemental strand, 27824 - 27591
Alignment:
| Q |
96 |
aaaccatcggaccacaaaaaatgtacctagtccaaaagttgaatgataatttaatgttccacatgagtttgtttaaaccaa--gaatattgaactcacct |
193 |
Q |
| |
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|||| ||||| ||||| |||||| |||| |||||| ||||||| |||||||| |||||| ||| |||||||||||| |||||||| | |||| |
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| T |
27824 |
aaactatcgggccacagaaaatgcaccttttccaaa-gttgaatcataatttacagttccatgtgatcttgtttaaaccataggaatattggagacaccc |
27726 |
T |
|
| Q |
194 |
caatgggttgaatcagattccctctgtcttagtttaacaaaagggt-gtttatgagtaattagtactatataaattaagactccctagctttcagattgt |
292 |
Q |
| |
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|| ||| |||||||||||||| | ||||| |||||||||||| ||| |||||| |||||||||||||||||| |||| |||||||||||| |||| |
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| T |
27725 |
cagtggtttgaatcagattcctt-tgtctaagtttaacaaaaaggttgtttat----aattagtactatataaatatagaccccctagctttcaatttgt |
27631 |
T |
|
| Q |
293 |
aacacaagacaaacacacttcctttcttcaatactactttct |
334 |
Q |
| |
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| ||||| |||| |||||| || ||||||||||||||||| |
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| T |
27630 |
agcacaacacaa--gcacttctttccttcaatactactttct |
27591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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