View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8163_low_11 (Length: 332)
Name: NF8163_low_11
Description: NF8163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8163_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 315
Target Start/End: Complemental strand, 6823423 - 6823124
Alignment:
| Q |
18 |
ggaattatttcctaagaaaattgcagctgctgtatttgtcacagctttcatgccttctcctgatctaagcttcttgactcttctccaagaggtactaaat |
117 |
Q |
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| T |
6823423 |
ggaattatttcctaagaaaattgcagctgctgtatttgtcacagctttcatgccttctcctgatctaagcttcctgactcttctccaagaggtactaaat |
6823324 |
T |
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| Q |
118 |
tattgctattttgtgtttttcccatatttcatagttatcatcaaccttgggaacatatgcatgatgcatacatatgtggctaatctagtgaataagacat |
217 |
Q |
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| T |
6823323 |
tattgctattttgtgtttttcccatatttcatagttatcatcaaccttgggaacatatgcacgatgcatacatatgtggctaatctagtgaataagacat |
6823224 |
T |
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| Q |
218 |
--gtcataataatgcatacatatgtggctaatcaagtgaatttataatgcatgcatatgtggagaatcaagtgaataagacataagttaaaaattccctc |
315 |
Q |
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| T |
6823223 |
aagtcataataatgcatacatatgtggctaatcaagtgaatttataatgcatgcatatgtggagaatcaagtgaataagacataagttaaaaattccctc |
6823124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 154
Target Start/End: Complemental strand, 6807441 - 6807306
Alignment:
| Q |
18 |
ggaattatttcctaagaaaattgcagctgctgtatttgtcacagctttcatgccttctcctgatctaagcttcttgactcttctccaagaggtactaaat |
117 |
Q |
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|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||| || |
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| T |
6807441 |
ggaattatttccaaagaaaattgcagctgctgtatttgttacagctttcatgccttctcctgatctaagctacttgagtctactccaagaggtacttgat |
6807342 |
T |
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| Q |
118 |
tattgctattttgtgtttttcccatatttcatagtta |
154 |
Q |
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| T |
6807341 |
tatccttattttg-atctttctcatatttcatagtta |
6807306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 6814226 - 6814131
Alignment:
| Q |
18 |
ggaattatttcctaagaaaattgcagctgctgtatttgtcacagctttcatgccttctcctgatctaagcttcttgactcttctccaagaggtact |
113 |
Q |
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|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||| |
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| T |
6814226 |
ggaattatttccaaagaaaattgcagctgctgtatttgttacagctttcatgccttctcctgatctaagctacttgagtctactccaagaggtact |
6814131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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