View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8163_low_15 (Length: 292)
Name: NF8163_low_15
Description: NF8163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8163_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 5344749 - 5345021
Alignment:
| Q |
1 |
caccaaatgtttgggctggtaaacctgcagccatagtgagtgctggaggagggcatggtggcgcaaaatcacaatatcatctccgacaaatcggagtttt |
100 |
Q |
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| T |
5344749 |
caccaaatgtttgggctggtaaacctgcggccatagtgagtgctggaggagggcatggtggtgcaaaatcacaatatcatctccgacaaatcggagtttt |
5344848 |
T |
|
| Q |
101 |
ccttgatcttcatttcataaataaacccgaatttttcttaaatgcttttcagcctccagcaaaatttaacagtgatggtgatttgattgatgaagatgct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
5344849 |
ccttgatcttcatttcataaataaacccgaatttttcttaaatgcttttcagcctccagcaaaatttaatagtgatggtgatttgattgatgaagatgct |
5344948 |
T |
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| Q |
201 |
aagaataggttgttggcaattctgttgtccttgaaggcatttactctgcaacttcaaggcaaaaattgaaaca |
273 |
Q |
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| T |
5344949 |
aagaataggttgttggcaattctgttgtccttgaaggcatttactctgcaacttcaaggcaaaaattgaaaca |
5345021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 5351767 - 5352039
Alignment:
| Q |
1 |
caccaaatgtttgggctggtaaacctgcagccatagtgagtgctggaggagggcatggtggcgcaaaatcacaatatcatctccgacaaatcggagtttt |
100 |
Q |
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||||||||||||||||||| || |||| ||||||||||||| ||||||||| || || || ||||| ||||| ||||||||||||||||| |||||||| |
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| T |
5351767 |
caccaaatgtttgggctggaaagtctgctgccatagtgagtgttggaggaggacacggcggtgcaaagtcacactatcatctccgacaaattggagtttt |
5351866 |
T |
|
| Q |
101 |
ccttgatcttcatttcataaataaacccgaatttttcttaaatgcttttcagcctccagcaaaatttaacagtgatggtgatttgattgatgaagatgct |
200 |
Q |
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| T |
5351867 |
catcgatcttcatttcatcaataaacccgagtttttcttaaacgcgtttcagcctccagcaaaatttaacggtgatggcgatttgattgatcaagatgcc |
5351966 |
T |
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| Q |
201 |
aagaataggttgttggcaattctgttgtccttgaaggcatttactctgcaacttcaaggcaaaaattgaaaca |
273 |
Q |
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||||||| ||| || | |||| |||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
5351967 |
aagaataatttggagggagttcttttgtccttgaaggcatttacccttcaacttcaaggcaaaaattgaaaca |
5352039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 5338364 - 5338238
Alignment:
| Q |
1 |
caccaaatgtttgggctggtaaacctgcagccatagtgagtgctggaggagggcatggtggcgcaaaatcacaatatcatctccgacaaatcggagtttt |
100 |
Q |
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|||||||||| |||||||||||| |||| ||||||||||||| |||||||| |||||| | |||| | ||| |||||||||| |||||||| ||||| |
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| T |
5338364 |
caccaaatgtatgggctggtaaaactgctgccatagtgagtgttggaggagcctttggtggaggaaaagctcaacatcatctccgccaaatcggggtttt |
5338265 |
T |
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| Q |
101 |
ccttgatcttcatttcataaataaacc |
127 |
Q |
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| T |
5338264 |
ccttgatattcatttcatcaataaacc |
5338238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 5325344 - 5325075
Alignment:
| Q |
1 |
caccaaatgtttgggctggtaaacctgcagccatagtgagtgctggaggagggcatggtggcgcaaaatcacaatatcatctccgacaaatcggagtttt |
100 |
Q |
| |
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||||||||||||||||||| || ||||| ||||| ||||||| |||||||| |||||| | |||| |||| |||||||||| |||||||| ||||| |
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| T |
5325344 |
caccaaatgtttgggctggaaagcctgctgccattgtgagtgttggaggagcctttggtggaggaaaagcacagcatcatctccgccaaatcggggtttt |
5325245 |
T |
|
| Q |
101 |
ccttgatcttcatttcataaataaacccgaatttttcttaaatgcttttcagcctccagcaaaatttaacagtgatggtgatttgattgatgaagatgct |
200 |
Q |
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||||||| |||||||||| |||||||| || || | | || ||| ||| ||| ||||| |||| |||| ||||||||| ||| |||||||||| |
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| T |
5325244 |
ccttgatattcatttcatcaataaacctgagttctacctagatgtatttaagcatccagataaatgtaacgatgatggtgacttggttgatgaagagatc |
5325145 |
T |
|
| Q |
201 |
aagaataggttgttggcaattctgttgtccttgaaggcatttactctgcaacttcaaggcaaaaattgaa |
270 |
Q |
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|||||||| ||| | | || | |||||||||||| |||||| || |||||||||||| |||||||| |
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| T |
5325144 |
aagaatagattgaagaaagttattgtgtccttgaaggaatttacccttaaacttcaaggcagaaattgaa |
5325075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 212
Target Start/End: Complemental strand, 14535443 - 14535336
Alignment:
| Q |
105 |
gatcttcatttcataaataaacccgaatttttcttaaatgcttttcagcctccagcaaaatttaacagtgatggtgatttgattgatgaagatgctaaga |
204 |
Q |
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|||||||||||||| |||||||| || || || ||| || ||| |||| || ||||| || || | |||||| ||||||||||||||||| ||||||| |
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| T |
14535443 |
gatcttcatttcatcaataaacctgagttctttataagagcatttgagccacctgcaaagttcaatactgatggcgatttgattgatgaagaggctaaga |
14535344 |
T |
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| Q |
205 |
ataggttg |
212 |
Q |
| |
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||| |||| |
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| T |
14535343 |
ataagttg |
14535336 |
T |
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