View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8163_low_17 (Length: 283)
Name: NF8163_low_17
Description: NF8163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8163_low_17 |
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| [»] scaffold0187 (4 HSPs) |
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Alignment Details
Target: scaffold0187 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 37 - 271
Target Start/End: Complemental strand, 27607 - 27364
Alignment:
| Q |
37 |
cttcaatactactttctagtcactaaggctaattaatattctcactctcaccaaccaaagagtctaccaccctctacctcagtagtaaaatgggaggaaa |
136 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27607 |
cttcaatactactttctagtcactaaggctaattaatattctcattctcaccaaccaaagagtctaccaccctctacctcagtagtaaaatgggaggaaa |
27508 |
T |
|
| Q |
137 |
caacaatcagaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaa---------gagggtattat |
227 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27507 |
caacaatcaaaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagaggaggaggagggtattat |
27408 |
T |
|
| Q |
228 |
tatgataatgcttcatatgataacaaagtgtggccaagtgatga |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27407 |
tatgataatgcttcatatgataacaaagtgtggccaagtgatga |
27364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 2 - 176
Target Start/End: Complemental strand, 177 - 1
Alignment:
| Q |
2 |
ttcagattgtaacacaagacaatc--actgttcctttcttcaatactactttctagtcactaaggctaattaatattctcactctcaccaaccaaagagt |
99 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
177 |
ttcagattgtaacacaagacaacacaacacttcctttcttcaatactactttctagtcactaaggctaattaatattctcactctcaccaaccaaagagt |
78 |
T |
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| Q |
100 |
ctaccaccctctacctcagtagtaaaatgggaggaaacaacaatcagaggaagtcatctaaatcatcatcattcagg |
176 |
Q |
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| T |
77 |
ctaccaccctctacctcagtagtaaaatgggaggaaacaacaatcagaggaagtcatctaaatcatcatcattcagg |
1 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 119 - 220
Target Start/End: Complemental strand, 6860 - 6765
Alignment:
| Q |
119 |
tagtaaaatgggaggaaacaacaatcagaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaaga |
218 |
Q |
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|||| |||||||||||||||| ||| |||||||| ||||||||||||| ||||||| ||||||||||| || |||||||| ||||||||||||||| |
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| T |
6860 |
tagtgaaatgggaggaaacaa---tcaaaggaagtcttctaaatcatcat---tcaggtctgttttcaacatttttaaatctagtagtaacaagcaaaga |
6767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 119 - 220
Target Start/End: Complemental strand, 17188 - 17093
Alignment:
| Q |
119 |
tagtaaaatgggaggaaacaacaatcagaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaaga |
218 |
Q |
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|||| |||||||||||||||| ||| |||||||| ||||||||||||| ||||||| ||||||||||| || |||||||| ||||||||||||||| |
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| T |
17188 |
tagtgaaatgggaggaaacaa---tcaaaggaagtcttctaaatcatcat---tcaggtctgttttcaacatttttaaatctagtagtaacaagcaaaga |
17095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 37 - 271
Target Start/End: Original strand, 37911470 - 37911713
Alignment:
| Q |
37 |
cttcaatactactttctagtcactaaggctaattaatattctcactctcaccaaccaaagagtctaccaccctctacctcagtagtaaaatgggaggaaa |
136 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37911470 |
cttcaatactactttctagtcactaaggctaattaatattctcattctcaccaaccaaagagtctaccaccctctacctcagtagtaaaatgggaggaaa |
37911569 |
T |
|
| Q |
137 |
caacaatcagaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaa---------gagggtattat |
227 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
37911570 |
caacaatcaaaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagaggaggaggagggtattat |
37911669 |
T |
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| Q |
228 |
tatgataatgcttcatatgataacaaagtgtggccaagtgatga |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37911670 |
tatgataatgcttcatatgataacaaagtgtggccaagtgatga |
37911713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 2 - 271
Target Start/End: Original strand, 37881495 - 37881768
Alignment:
| Q |
2 |
ttcagattgtaacacaagacaatcactgttcctttcttcaatactactttctagtcactaaggctaattaatattctcactctcaccaaccaaagagtct |
101 |
Q |
| |
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|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
37881495 |
ttcagattgtaacacaagacaaacacacttcctttcttcaatactactttctagtcaccaaggataattaatattctcactctcaccaaccaaagagtc- |
37881593 |
T |
|
| Q |
102 |
accaccctctacctcagtagtaaaatgggaggaaacaacaatcagaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatcta |
201 |
Q |
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||||| || || || | |||| ||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37881594 |
accactctata-ctaactagtgaaatgggagga---aacagtcaaaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatcta |
37881689 |
T |
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| Q |
202 |
gcagtaacaagcaaa---------gagggtattattatgataatgcttcatatgataacaaagtgtggccaagtgatga |
271 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37881690 |
gcagtaacaagcaaagaggaggaggagggtattattatgataatgcttcatatgataacaaagtgtggccaagtgatga |
37881768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 78 - 271
Target Start/End: Original strand, 37867531 - 37867728
Alignment:
| Q |
78 |
tcactctcaccaaccaaagagtctaccaccctctacctcagtagtaaaatgggaggaaacaacaatcagaggaagtcatctaaatcatcatcattcaggt |
177 |
Q |
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|
||||||||||||||||||| ||| ||||| || ||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
37867531 |
tcactctcaccaaccaaagtgtc-accactctatac-tcagtagtaaaatgggaggaaacaa---tcaaaggaagtcatctaaatcatcatcattcaggt |
37867625 |
T |
|
| Q |
178 |
cagttttcaacatattcaaatctagcagtaacaagcaaa---------gagggtattattatgataatgcttcatatgataacaaagtgtggccaagtga |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37867626 |
cagttttcaacatattcaaatctagcagtaacaagcaaagaggaggaggagggtattattatgataatgcttcatatgataacaaagtgtggccaagtga |
37867725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 138 - 271
Target Start/End: Original strand, 37855398 - 37855540
Alignment:
| Q |
138 |
aacaatcagaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaa---------gagggtattatt |
228 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37855398 |
aacaatcaaaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagaggaggaggagggtattatt |
37855497 |
T |
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| Q |
229 |
atgataatgcttcatatgataacaaagtgtggccaagtgatga |
271 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37855498 |
atgataatgcttcatatgataacaaagtgtggccaagtgatga |
37855540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 78 - 271
Target Start/End: Complemental strand, 9239873 - 9239676
Alignment:
| Q |
78 |
tcactctcaccaaccaaagagtctaccaccctctacctcagtagtaaaatgggaggaaacaacaatcagaggaagtcatctaaatcatcatcattcaggt |
177 |
Q |
| |
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||||||||||||||||||||||| |||| || ||| || |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
9239873 |
tcactctcaccaaccaaagagtcg-ccactctatac-tcggtagtaaaatgggaggaaacaa---tcaaaggaagtcatctaaatcatcatcattcaggt |
9239779 |
T |
|
| Q |
178 |
cagttttcaacatattcaaatctagcagtaacaagcaaa---------gagggtattattatgataatgcttcatatgataacaaagtgtggccaagtga |
268 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9239778 |
cagttttcaacatattcaaatctagcaataacaagcaaagaggaggaggagggtattattatgataatgcttcatatgataacaaagtgtggcctagtga |
9239679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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