View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8163_low_19 (Length: 250)
Name: NF8163_low_19
Description: NF8163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8163_low_19 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 39151 - 39355
Alignment:
| Q |
1 |
attacatctttggatctggtggtaatcccttcattcagattccgtaggataagttccttaggatgatcattttgaattctaatagatgtacctttgttga |
100 |
Q |
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| T |
39151 |
attacatctttggatctggtggtaatcccttcattcagattccgtaggataaggtccttaggatgatcattttgaattataatagatgtacctttgttga |
39250 |
T |
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| Q |
101 |
tttgcacctcactagaatctgactcaatgtttgactcaatgtcgagacattttcttaagcatcagattgctgagaggatgttccaacatcgtcttcgaca |
200 |
Q |
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| T |
39251 |
tttgcacctcactagaatctgactcaatgtct-----------gagacattttcttgagcatcagattgctgagaggatgttccaatatcgtcttcgaca |
39339 |
T |
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| Q |
201 |
tccgtatcattttcaa |
216 |
Q |
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| T |
39340 |
tccgtatcattttcaa |
39355 |
T |
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Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 26 - 216
Target Start/End: Original strand, 20175697 - 20175888
Alignment:
| Q |
26 |
tcccttcattcagattccgtaggataagttccttaggatgatcattttgaattctaatagatgtacctttgttgatttgcacctcactagaatctgactc |
125 |
Q |
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|||||||||||||||| | || |||||| ||||| | ||||| |||||||| |||||| ||| |||||| |||| ||| || ||| | || |||||||| |
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| T |
20175697 |
tcccttcattcagatttcatatgataaggtcctttagttgatccttttgaatactaatatatggacctttattgacttgtacttcattggagtctgactc |
20175796 |
T |
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| Q |
126 |
aatgtttgactcaatgtc-gagacattttcttaagcatcagattgctgagaggatgttccaacatcgtcttcgacatccgtatcattttcaa |
216 |
Q |
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| T |
20175797 |
aatgttggactcaatgtctgagacatcttctggagaatcaagttgttgaaaggatgttccagcttcgtcttcgacatccttagccttttcaa |
20175888 |
T |
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