View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8163_low_2 (Length: 684)
Name: NF8163_low_2
Description: NF8163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8163_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 572; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 13 - 666
Target Start/End: Complemental strand, 46754129 - 46753486
Alignment:
| Q |
13 |
gagaagaactagagaataaaaatatcagttacatatggacaacaagaacaaaagcttagtgatacagccaaaatgcaggcaaagactaaaaagaataaaa |
112 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
46754129 |
gagaagaactaaagaataaaaatatcagttacatatggacaacaagaacaaaaacttagtgatatagccaaaatgtaggcaaagactaaaaagaataaaa |
46754030 |
T |
|
| Q |
113 |
gagaccggagctaaataaaaactcccaaatatgagagtgtgttaagccaccacatgtggtaagaaaaagcaaaactaggatgatttgccttcaactacta |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46754029 |
gagaccggagctaaataaaaactcccaaatatgagagtgtgttaagccaccacatgtggtaagaaaaagcaaaactaggatgatttgccttcaactacta |
46753930 |
T |
|
| Q |
213 |
gaagaattgaaacttaaccttttctacgagatgattaatggagtcccccttttgttgaaaaactctagtgttcctgtcacgccaaacatgtaattgacag |
312 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
46753929 |
gaagaattgaaacttaaccttttctacgagatgattaatggagtcccccttttgttgaaaaactctagtgtt------------aacatgtaattgacag |
46753842 |
T |
|
| Q |
313 |
ataaaaacaacaacaaaaatgtaaagaattatttacatactactttctgtaatctaaac--caaccaacaacaaaatctaatggagtatcataactaacc |
410 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
46753841 |
ataaaaacaacaacaaatatgtaaagaattatttacatactacttcctgtaatctaaacaacaaccaacaacaaaatctaatggagtatcataactaacc |
46753742 |
T |
|
| Q |
411 |
gatttaaaatttactcatttctttctgcaatctttaaagatcgtatctataattataaagtattaattcattgaaaaaattcaaaagaaagtttgagaaa |
510 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
46753741 |
gatttaaaatttactcgtttctttctgcaatctttaaagatcgtatctataattataaagtattaattcattgaaaaacttcaaaagaaagtttgagaaa |
46753642 |
T |
|
| Q |
511 |
gctcttcaagggacgttgaagccatagtcccaccatggccatcaccaaacctctttattctttcactaattgtgccttgagtatcttattagtcaaacaa |
610 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46753641 |
gctcttcaagggacgttgaagccatagtcccaccatggccatcaccaaacctctttattctttcactaattgtgccttgagtatcttattagtcaaacaa |
46753542 |
T |
|
| Q |
611 |
aattattgatattgtggaatgaaaatgcattgaactgacggcgcaatagtgaaatt |
666 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46753541 |
aattattgatattgtggaatgaaaatgcattgaactgacggcgcaatagtgaaatt |
46753486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 1e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 14 - 280
Target Start/End: Complemental strand, 1680853 - 1680587
Alignment:
| Q |
14 |
agaagaactagagaataaaaatatcagttacatatggacaacaagaacaaaagcttagtgatacagccaaaatgcaggcaaagactaaaaagaataaaag |
113 |
Q |
| |
|
||||| ||||||||| || ||||||||| ||| || | | ||||||||||| |||| ||||| |||||||| || ||||| |||||| |||||||||| |
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|
| T |
1680853 |
agaaggactagagaaaaataatatcagtcgcatctgaaaaccaagaacaaaaacttaatgatatagccaaaaatcatgcaaacactaaagagaataaaag |
1680754 |
T |
|
| Q |
114 |
agaccggagctaaataaaaactcccaaatatgagagtgtgttaagccaccacatgtggtaagaaaaagcaaaactaggatgatttgccttcaactactag |
213 |
Q |
| |
|
| | || | ||||||||||||||| ||| ||||||||| |||| |||||| ||||||||| ||| |||||||| ||||||||| |||||| ||||| |
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|
| T |
1680753 |
aaatcgaaactaaataaaaactcctaaacatgagagtggcttaaaccaccaggtgtggtaagtgaaatcaaaactatgatgatttgtcttcaatcactag |
1680654 |
T |
|
| Q |
214 |
aagaattgaaacttaaccttttctacgagatgattaatggagtcccccttttgttgaaaaactctag |
280 |
Q |
| |
|
||| |||| | ||||||||||||| ||| || |||||||||| ||| ||||||||||||||||||| |
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|
| T |
1680653 |
aaggattggagtttaaccttttctatgagttgtttaatggagtaccctttttgttgaaaaactctag |
1680587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 229
Target Start/End: Original strand, 26159664 - 26159739
Alignment:
| Q |
154 |
ttaagccaccacatgtggtaagaaaaagcaaaactaggatgatttgccttcaactactagaagaattgaaacttaa |
229 |
Q |
| |
|
||||||||||||||||| ||| |||||||||| |||||||||||| ||||| | |||||||| |||||| ||||| |
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|
| T |
26159664 |
ttaagccaccacatgtgataactaaaagcaaaattaggatgatttgtcttcagccactagaaggattgaagcttaa |
26159739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 44659590 - 44659467
Alignment:
| Q |
20 |
actagagaataaaaatatcagttacatatggacaacaagaacaaaagcttagtgatacagcc-aaaatgcaggcaaagactaaaaagaataaaagagacc |
118 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||||||||| |||||| |||||||| |||||||| |||| | ||||| |||| ||||||||| |
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| T |
44659590 |
actagagaataaaaatatcagttacatctggataacaagaacaaaatcttagtaatacagccaaaaatgcatgcaaccattaaaacgaattaaagagacc |
44659491 |
T |
|
| Q |
119 |
ggagctaaataaaaactcccaaat |
142 |
Q |
| |
|
| || ||||||| |||| |||||| |
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|
| T |
44659490 |
gaagttaaataagaacttccaaat |
44659467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 154 - 298
Target Start/End: Complemental strand, 12251007 - 12250863
Alignment:
| Q |
154 |
ttaagccaccacatgtggtaagaaaaagcaaaactaggatgatttgccttcaactactagaagaattgaaacttaaccttttctacgagatgattaatgg |
253 |
Q |
| |
|
||||||||||||||||| ||| |||||||||| || |||||||||| |||||| |||||||| |||| | |||||| || |||| || ||| | || | |
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|
| T |
12251007 |
ttaagccaccacatgtgataattaaaagcaaaattatgatgatttgctttcaaccactagaaggattggagcttaactttatctaaaagttgaatgattg |
12250908 |
T |
|
| Q |
254 |
agtcccccttttgttgaaaaactctagtgttcctgtcacgccaaa |
298 |
Q |
| |
|
| | || |||||||||||||||||||| ||| |||||||||||| |
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|
| T |
12250907 |
aattcctcttttgttgaaaaactctagcattcttgtcacgccaaa |
12250863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 154 - 292
Target Start/End: Complemental strand, 26698181 - 26698043
Alignment:
| Q |
154 |
ttaagccaccacatgtggtaagaaaaagcaaaactaggatgatttgccttcaactactagaagaattgaaacttaaccttttctacgagatgattaatgg |
253 |
Q |
| |
|
||||||||||||||||| ||| |||||||||| |||||||||||| ||||||| || ||||| |||||| ||||| || |||| ||| || | || | |
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|
| T |
26698181 |
ttaagccaccacatgtgataattaaaagcaaaattaggatgatttggcttcaaccaccagaaggattgaagcttaattttatctatgagttggatgattg |
26698082 |
T |
|
| Q |
254 |
agtcccccttttgttgaaaaactctagtgttcctgtcac |
292 |
Q |
| |
|
| | ||||||||||||||||||||| |||||||||| |
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|
| T |
26698081 |
aattttccttttgttgaaaaactctagcattcctgtcac |
26698043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 221
Target Start/End: Complemental strand, 55416999 - 55416932
Alignment:
| Q |
154 |
ttaagccaccacatgtggtaagaaaaagcaaaactaggatgatttgccttcaactactagaagaattg |
221 |
Q |
| |
|
||||||||||| |||||||| |||||||||| |||||||||||||||||||| || |||||||||| |
|
|
| T |
55416999 |
ttaagccaccatgtgtggtaattaaaagcaaaattaggatgatttgccttcaaccaccagaagaattg |
55416932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 48825355 - 48825408
Alignment:
| Q |
154 |
ttaagccaccacatgtggtaagaaaaagcaaaactaggatgatttgccttcaac |
207 |
Q |
| |
|
||||||||| ||||||||||| |||| ||||| |||||||||||||||||||| |
|
|
| T |
48825355 |
ttaagccacgacatgtggtaattaaaaacaaaattaggatgatttgccttcaac |
48825408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 153 - 300
Target Start/End: Complemental strand, 30541994 - 30541846
Alignment:
| Q |
153 |
gttaagccaccacatgtggtaagaaaaagcaaaactaggatgatttgccttcaactactagaagaattgaaacttaaccttttctacgagatgattaatg |
252 |
Q |
| |
|
||||||||||| ||| || ||| |||||||||| |||||||||||| |||||| || ||||| |||| | ||||| || ||| || |||| ||| |
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|
| T |
30541994 |
gttaagccaccgcatatgataattaaaagcaaaattaggatgatttgttttcaaccacaagaaggattggagcttaattttccctataagttgatgaata |
30541895 |
T |
|
| Q |
253 |
gagtcccccttttgtt-gaaaaactctagtgttcctgtcacgccaaaca |
300 |
Q |
| |
|
||||| |||||||||| ||||||||||| ||| ||||| |||||||| |
|
|
| T |
30541894 |
gagtctcccttttgttataaaaactctagccttcttgtcatgccaaaca |
30541846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 262 - 298
Target Start/End: Original strand, 23690603 - 23690639
Alignment:
| Q |
262 |
ttttgttgaaaaactctagtgttcctgtcacgccaaa |
298 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
23690603 |
ttttgttgaaaaactctagtattcctatcacgccaaa |
23690639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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