View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8163_low_23 (Length: 247)
Name: NF8163_low_23
Description: NF8163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8163_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 49825318 - 49825515
Alignment:
| Q |
1 |
ccgtaattccaaccttaaatagcatttgttttccaacaacaatatcaaattcatttggatactcgctcgcttgagggtttaccctgatcaaatgaaacgc |
100 |
Q |
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| T |
49825318 |
ccgtaatttcaaccttaaatagcatttgttttccaacaaaaatatccaactcattgggatactcg----cttgagggtttaccctgatcaaataaaacgc |
49825413 |
T |
|
| Q |
101 |
actccaaattaccaacatgcataaaaatacgatcgtatcacaatatnnnnnnnngatataaccaaagtgatcataatttacctgactgtttgcctcaatc |
200 |
Q |
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||||||||||| ||||||||||||||||| ||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49825414 |
actccaaattaataacatgcataaaaatacaatcatatcacaata----aaaaagctataaccaaagtgatcataatttacctgactgtttgcctcaatc |
49825509 |
T |
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