View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8163_low_26 (Length: 225)
Name: NF8163_low_26
Description: NF8163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8163_low_26 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 106219 - 106421
Alignment:
| Q |
1 |
gtataaagctttcttttatgttactaattctccggagaatttgccactgtttcgattacgtcaagcctttgaagtttgtgggatgttatctgatttatat |
100 |
Q |
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| T |
106219 |
gtataaagcctacttttatgttactaattctccggagaatttgccactgtttcgattacgtcaagcctttgaagtttgtgggatgttatcttatttatat |
106318 |
T |
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| Q |
101 |
gtggcacgacataggaatgctcgtggtcagtaatttgggtttgccaggtttgttaatgtcaaaaatattattaaattgttacaaactttgaatagtgttt |
200 |
Q |
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| T |
106319 |
gtggcacgacataggaatgctcgtggtcgggaatttgggtttgccaggttttttaatgtcaaaaataatattaaattgttacaaactttgaatagtgttt |
106418 |
T |
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| Q |
201 |
ggg |
203 |
Q |
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||| |
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| T |
106419 |
ggg |
106421 |
T |
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Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 5 - 165
Target Start/End: Original strand, 40901537 - 40901697
Alignment:
| Q |
5 |
aaagctttcttttatgttactaattctccggagaatttgccactgtttcgattacgtcaagcctttgaagtttgtgggatgttatctgatttatatgtgg |
104 |
Q |
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| T |
40901537 |
aaagcttccttttatgttactaattttccagaacatttgccattgtttcatttacgtcaagcattcgaagtgtgtgggattctttctgatttatatgtgg |
40901636 |
T |
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| Q |
105 |
cacgacataggaatgctcgtggtcagtaatttgggtttgccaggtttgttaatgtcaaaaa |
165 |
Q |
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| T |
40901637 |
cacgccatagaaacgctcgtggacaagaatttggttttgtcaggtttgttaatgtgaaaaa |
40901697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 167
Target Start/End: Complemental strand, 19254376 - 19254213
Alignment:
| Q |
4 |
taaagctttcttttatgttactaattctccggagaatttgccactgtttcgattacgtcaagcctttgaagtttgtgggatgttatctgatttatatgtg |
103 |
Q |
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|||||||| |||||||||||||| | ||||| |||||||| ||| ||| |||||||||| |||||||| ||||| || ||||||| | ||||| |
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| T |
19254376 |
taaagcttctttttatgttactaactttccgggtaatttgcctatgtatcgtatacgtcaagcatttgaagtatgtggtatcctatctgacgtttatgtt |
19254277 |
T |
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| Q |
104 |
gcacgacataggaatgctcgtggtcagtaatttgggtttgccaggtttgttaatgtcaaaaata |
167 |
Q |
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| T |
19254276 |
gcacgacattagaatgctagaggtaaggaatttgggtttgttaggtttgtaaatgtgaaaaata |
19254213 |
T |
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