View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8163_low_3 (Length: 679)
Name: NF8163_low_3
Description: NF8163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8163_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 591; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 10 - 660
Target Start/End: Complemental strand, 38756360 - 38755709
Alignment:
| Q |
10 |
aagcagagacacattcaagaaaagatgagtccaattattaagttaacttgtttgtcaccctgttaacatcaaaatgtaagatctcaccacaaccaccaaa |
109 |
Q |
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| T |
38756360 |
aagcaaagacacattcaagaaaagatgagtccaattattaagttaacttgtttgtcaccctgttaacatcaaaatgtaagatctcaccacaaccaccaaa |
38756261 |
T |
|
| Q |
110 |
a-tgaacgtgatttcaaaagcaattatacttcaattaagcgtttcaatcgacaattgagaccagttaaaccacaattgtttattgcaaagttttcccact |
208 |
Q |
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| T |
38756260 |
aatgaacgtgatttcaaaagcaattatacttcaattaagcgtttcaatcgacaattgagaccagttaaaccacaattgtttattgcaaagttttcccact |
38756161 |
T |
|
| Q |
209 |
accactcctagtattttttcgaatttagttatttagcaacaactagtatacnnnnnnnaagacaactatgattggtactcgatggtaagtaactatagtc |
308 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
38756160 |
accactcctcgtattttttcgaatttagttatttagcaacaactagtatactttttttaagacaactatgattggtacttgatggtaagtaactacagtc |
38756061 |
T |
|
| Q |
309 |
caatttcttatcctcaatttcgactttggaaaatatgatattttatggtaggtttgtagtttctacttagtatatatcgctccaatttcatatcctcact |
408 |
Q |
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| T |
38756060 |
caatttcctatcctcactttcgactttggaaaatatgatattttatggtaggtttgtagtttctacttaggatatatcgctccaatttcatatcctcact |
38755961 |
T |
|
| Q |
409 |
tttagtaacttaaatgttaaggattgagggcttttgactgagtgattttgaaaaacccatacaatagaaatactttcgatgctggttatcaagtcaagga |
508 |
Q |
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| T |
38755960 |
tttagtaacttaaatgttaaggattgagggcttttgactgagtgattttgaaaaacccatacaatagaaatactttcgatgctggttatcaagtcaagga |
38755861 |
T |
|
| Q |
509 |
ttgagagtggaaagaagagaaattagggattgtttggtgagaagtgagaaattgacgagggtaaaaattagtgtttgtacatgttaaacattagaagcta |
608 |
Q |
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| T |
38755860 |
ttgagagtggaaagaagagaaattagggattgtttggtgagaagtgagaaattgacgagggtaaaaattagtgtttgttcatgttaaacattagaagcta |
38755761 |
T |
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| Q |
609 |
atttattgtaatgaaaattttgcatgatgcaaagctaataagaagaggtaca |
660 |
Q |
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| T |
38755760 |
atttattgtaatgaaaattttgcatgatgcaaagctaataagaagaggtaca |
38755709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 9e-41; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 419 - 551
Target Start/End: Original strand, 46609274 - 46609411
Alignment:
| Q |
419 |
taaatgttaaggattgagggcttt-----tgactgagtgattttgaaaaacccatacaatagaaatactttcgatgctggttatcaagtcaaggattgag |
513 |
Q |
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|||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||| ||||||||||||| ||| ||||||||| |||||||||| |
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| T |
46609274 |
taaatgttaaggattgagggctttagttttgagtgagtgatttcgaaaaacccatacaatataaatactttcgatactgattatcaagtgaaggattgag |
46609373 |
T |
|
| Q |
514 |
agtggaaagaagagaaattagggattgtttggtgagaa |
551 |
Q |
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| T |
46609374 |
agtggaaagaagagaaagtagggatcgtttggtgagaa |
46609411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 267 - 375
Target Start/End: Original strand, 46609096 - 46609207
Alignment:
| Q |
267 |
aagacaactatgattggtactcgatggtaagtaactatagtccaatttctt---atcctcaatttcgactttggaaaatatgatattttatggtaggttt |
363 |
Q |
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||||||||||||||||||||| ||| |||||||||||||||||||||| | ||||||| ||||||||||||| |||||||||||||| || |||||| |
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| T |
46609096 |
aagacaactatgattggtacttgatattaagtaactatagtccaatttcctcctatcctcactttcgactttggagaatatgatattttacggcaggttt |
46609195 |
T |
|
| Q |
364 |
gtagtttctact |
375 |
Q |
| |
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|||||||||||| |
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| T |
46609196 |
gtagtttctact |
46609207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 202
Target Start/End: Original strand, 46609063 - 46609094
Alignment:
| Q |
171 |
agttaaaccacaattgtttattgcaaagtttt |
202 |
Q |
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| T |
46609063 |
agttaaaccacaattgtttattgcaaagtttt |
46609094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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