View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8163_low_4 (Length: 618)
Name: NF8163_low_4
Description: NF8163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8163_low_4 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 564; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 20 - 598
Target Start/End: Original strand, 4302457 - 4303036
Alignment:
| Q |
20 |
tcacatagatcaaaaacttggagatgagctagccaatccttttgaaaaatctaaatgccatgcaaatgtcttgaccacaaagaaatatggtgttaacaag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4302457 |
tcacatagatcaaaaacttggagatgagctagccaatccttttgaaaaatctaaatgccatgcaaatgtcttgaccacaaagaaatatggtgttaacaag |
4302556 |
T |
|
| Q |
120 |
aatgagcttctgaaggcttgtgctagtatagaatttttgcttatgaagccgaaatttgaggtgaagcccattaaagtcctagctagtgacaatggatcaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4302557 |
aatgagcttctgaaggcttgtgctagtatagaatttttgcttatgaagccgaaatttgaggtgaagcccattaaagtcctagctagtgacaatggatcaa |
4302656 |
T |
|
| Q |
220 |
ctgatggaaaaatagtggtggatgagaaacatggaagtaatgtctatgtgaaatgctattatgtcagtttcttgataaacaaagcctccactcttgatca |
319 |
Q |
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|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4302657 |
ctgatggaaaaatggtggtggatgagaaacatggaagtaatgtctatgtgaaatgctattatgtcagtttcttgataaacaaagcctccactcttgatca |
4302756 |
T |
|
| Q |
320 |
atattatgcatatcttgtgaatgtatttttaagctttattaaaggcttatataaagtggaaccaagaaacattatacaaagggtactctcaccatttggt |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4302757 |
atattatgcatatcttgtgaatgtatttttaagctttattaaaggcttatataaagtggaaccaagaaacattatactaagggtactctcaccatttggt |
4302856 |
T |
|
| Q |
420 |
gttctgcatgttattaaa-ctttacttggatttcatgaaaaaggatattggttattctctcaaataaaaggggattcgtcaactgtgttggtttcattca |
518 |
Q |
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|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4302857 |
gttctgcatgttattaaacctttacttggatttcatgaaaaaggatattggttattctctcaaataaaaggggattcgtcaactgtgttggtttcattca |
4302956 |
T |
|
| Q |
519 |
ttcttatacttcaagtacaaaatgattaggcatcacttaacagtgctctaacttatatagaattatcaagtgattctgct |
598 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4302957 |
ttcttatacttcaagtacaaaatgattaggcatcacttaacagtgctctaacttatatagaattatcaagtgattctgct |
4303036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 265; Significance: 1e-147; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 275 - 574
Target Start/End: Original strand, 31635399 - 31635698
Alignment:
| Q |
275 |
ctattatgtcagtttcttgataaacaaagcctccactcttgatcaatattatgcatatcttgtgaatgtatttttaagctttattaaaggcttatataaa |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31635399 |
ctattatgtcagtttcttgataaacaaagcctccactcttgatcaatattatgcatatcttgtgaatgtatttttaagctttattaaaggcttatataaa |
31635498 |
T |
|
| Q |
375 |
gtggaaccaagaaacattatacaaagggtactctcaccatttggtgttctgcatgttattaaa-ctttacttggatttcatgaaaaaggatattggttat |
473 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
31635499 |
gtggaaccaagaaacattataccaagggtactctcaccatttggtgttctgcatgttattaaacctttacttggatttcatgaaaaaggatattggttat |
31635598 |
T |
|
| Q |
474 |
tctctcaaataaaaggggattcgtcaactgtgttggtttcattcattcttatacttcaagtacaaaatgattaggcatcacttaacagtgctctaactta |
573 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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|
| T |
31635599 |
tctctcaaataaaaggggattcgtcta-tgtgttggtttcatttattcttatacttcaagtacaaaatgatcaggcatcacttaacggtgctctaactta |
31635697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 283 - 598
Target Start/End: Original strand, 35681518 - 35681837
Alignment:
| Q |
283 |
tcagtttcttgataaacaaagcctccactcttgatcaatattatgcatatcttgtgaatgtatttttaagctttattaaaggcttatataaagtggaacc |
382 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||||||||||| || |||||| |||||||||||||| |||||||||||||||||||| ||| |
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|
| T |
35681518 |
tcagtttcttgataaacaaaacctccactcatgatcaatattatgcatattttatgaatgcatttttaagctttactaaaggcttatataaagtgggacc |
35681617 |
T |
|
| Q |
383 |
aagaaacattatacaaagggtactctcaccatttggtgttctgc---atgttattaaac-tttacttggatttcatgaaaaaggatattggttattctct |
478 |
Q |
| |
|
||||||| ||| || ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
35681618 |
aagaaacgttagactaagggtactctcaccatttggtgttctgctgcatgttattaaacctttacttggatttcatgaaaagggatattggttattctct |
35681717 |
T |
|
| Q |
479 |
caaataaaaggggattcgtcaactgtgttggtttcattcattcttatacttcaagtacaaaatgattaggcatcacttaacagtgctctaacttatatag |
578 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||| || |
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|
| T |
35681718 |
taaataaaaagggattcgtttactgtgttggtttcattcattcttacacttcaagtacaaaatgatcaggcatcacttaacagtactctaacttatacag |
35681817 |
T |
|
| Q |
579 |
aattatcaagtgattctgct |
598 |
Q |
| |
|
||||||||||||| |||||| |
|
|
| T |
35681818 |
aattatcaagtgagtctgct |
35681837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 219 - 255
Target Start/End: Original strand, 6960686 - 6960722
Alignment:
| Q |
219 |
actgatggaaaaatagtggtggatgagaaacatggaa |
255 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||| |
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|
| T |
6960686 |
actgatggaaaaatggtggtggatgagaaatatggaa |
6960722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 219 - 255
Target Start/End: Original strand, 6968081 - 6968117
Alignment:
| Q |
219 |
actgatggaaaaatagtggtggatgagaaacatggaa |
255 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
6968081 |
actgatggaaaaatggtggtggatgagaaatatggaa |
6968117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 566 - 598
Target Start/End: Original strand, 31635882 - 31635914
Alignment:
| Q |
566 |
ctaacttatatagaattatcaagtgattctgct |
598 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
|
|
| T |
31635882 |
ctaacttatatagaattatcaagtgagtctgct |
31635914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 208; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 251 - 590
Target Start/End: Original strand, 37192582 - 37192926
Alignment:
| Q |
251 |
tggaagtaatgtctatgtgaaatgctattatgtcagtttcttgataaacaaagcctccactcttgatcaatattatgcatatcttgtgaatgtattttta |
350 |
Q |
| |
|
|||||||||||||| |||| ||| |||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||| |||||| ||||||| |
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|
| T |
37192582 |
tggaagtaatgtctctgtgcaatcctattatgtcagtttcttgaaaaacaaagcttctactcttgatcaatattatgcatatcttatgaatgcattttta |
37192681 |
T |
|
| Q |
351 |
agctttattaaaggcttatataaagtggaaccaagaaacatta----tacaaagggtactctcaccatttggtgttctgcatgttattaaa-ctttactt |
445 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||| ||| || |||||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
37192682 |
agctttattaaaggcttatatgaagtgggaccaagaaacgttagactaactaagggtactctcaccatttgatgttctgcatgttattaaacctttactt |
37192781 |
T |
|
| Q |
446 |
ggatttcatgaaaaaggatattggttattctctcaaataaaaggggattcgtcaactgtgttggtttcattcattcttatacttcaagtacaaaatgatt |
545 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||| |||||||||||||||| ||| | |
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|
| T |
37192782 |
ggacttcatgaaaaaggatattggttattctctcaaataaaaagggatccacttactgtgttggtttcattcattcctatacttcaagtacaacatggtc |
37192881 |
T |
|
| Q |
546 |
aggcatcacttaacagtgctctaacttatatagaattatcaagtg |
590 |
Q |
| |
|
||||||||||||||| ||||||| ||| ||||||||||||||||| |
|
|
| T |
37192882 |
aggcatcacttaacaatgctctagcttgtatagaattatcaagtg |
37192926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 6e-57; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 20 - 168
Target Start/End: Complemental strand, 2163488 - 2163340
Alignment:
| Q |
20 |
tcacatagatcaaaaacttggagatgagctagccaatccttttgaaaaatctaaatgccatgcaaatgtcttgaccacaaagaaatatggtgttaacaag |
119 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| || || ||||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
2163488 |
tcacataggtcaaaaacttggagatgagctagccaatccttttgacaagtcgaaatgccatgcaagtgtcttgaccacaaagaaatacggtgttaacaag |
2163389 |
T |
|
| Q |
120 |
aatgagcttctgaaggcttgtgctagtatagaatttttgcttatgaagc |
168 |
Q |
| |
|
|| ||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
2163388 |
aaggagcttctgaaggcttgtgctagcagagaatttttgcttatgaagc |
2163340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 34 - 167
Target Start/End: Complemental strand, 2151196 - 2151063
Alignment:
| Q |
34 |
aacttggagatgagctagccaatccttttgaaaaatctaaatgccatgcaaatgtcttgaccacaaagaaatatggtgttaacaagaatgagcttctgaa |
133 |
Q |
| |
|
|||||||||| ||||| ||| |||| ||||| || ||||||| ||| |||||||||||| ||||||||||||||| |||||||||| ||||| || | |
|
|
| T |
2151196 |
aacttggagaagagctggccgatccatttgacaagtctaaatttcattcaaatgtcttgatcacaaagaaatatgggattaacaagaaggagctgctaag |
2151097 |
T |
|
| Q |
134 |
ggcttgtgctagtatagaatttttgcttatgaag |
167 |
Q |
| |
|
|||||||||||| | ||| || |||||||||||| |
|
|
| T |
2151096 |
ggcttgtgctagcagagagttattgcttatgaag |
2151063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 7e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 163 - 255
Target Start/End: Complemental strand, 49100247 - 49100155
Alignment:
| Q |
163 |
tgaagccgaaatttgaggtgaagcccattaaagtcctagctagtgacaatggatcaactgatggaaaaatagtggtggatgagaaacatggaa |
255 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||||||| || || ||||||||| |||||||| ||||||||||||||| |||||| |
|
|
| T |
49100247 |
tgaagccgaaatttgaggtgaagcacattaaagtcttagctagtggcattgaatcaactgacggaaaaatggtggtggatgagaaaaatggaa |
49100155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 163 - 255
Target Start/End: Complemental strand, 49112063 - 49111971
Alignment:
| Q |
163 |
tgaagccgaaatttgaggtgaagcccattaaagtcctagctagtgacaatggatcaactgatggaaaaatagtggtggatgagaaacatggaa |
255 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||| ||||||||| || || ||| |||||||||||||||||||| |||||||||||||||| |
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|
| T |
49112063 |
tgaatccgaaatttgaggtgaagcctattaaagtcttagctagtggcattgaatccactgatggaaaaatagtggtagatgagaaacatggaa |
49111971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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