View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8163_low_7 (Length: 477)

Name: NF8163_low_7
Description: NF8163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8163_low_7
NF8163_low_7
[»] chr4 (4 HSPs)
chr4 (1-130)||(48642838-48642967)
chr4 (148-249)||(48642992-48643093)
chr4 (315-396)||(48643159-48643240)
chr4 (419-461)||(48643260-48643302)
[»] chr7 (1 HSPs)
chr7 (433-461)||(23221412-23221440)
[»] chr6 (1 HSPs)
chr6 (433-461)||(4826310-4826338)
[»] chr1 (2 HSPs)
chr1 (434-462)||(11241999-11242027)
chr1 (433-461)||(13401617-13401645)


Alignment Details
Target: chr4 (Bit Score: 126; Significance: 9e-65; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 48642838 - 48642967
Alignment:
Q  1 tcagaaaaatcattagactgaaacgacatattcttataaaattcgtggtggtgttaatttttaagtcaacaattaatgtaacatacacaagtttaattaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48642838 tcagaaaaatcattagactgaaacgacatattcttataaaattcatggtggtgttaatttttaagtcaacaattaatgtaacatacacaagtttaattaa 48642937  T
Q  101 tccttgtagaagatgagatgagaaggtaac 130  Q
    ||||||||||||||||||||||||||||||    
T  48642938 tccttgtagaagatgagatgagaaggtaac 48642967  T

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Target: chr4; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 148 - 249
Target Start/End: Original strand, 48642992 - 48643093
Alignment:
Q  148 atggtgggccatataacctcttcgttataaatagcagcaatgtgctacaagtgtcttaccacaagcatcagtgtttacaactccttcgtctccttgagcg 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48642992 atggtgggccatataacctcttcgttataaatagcagcaatgtgctacaagtgtcttaccacaagcatcagtgtttacaactccttcgtctccttgagcg 48643091  T
Q  248 gg 249  Q
    ||    
T  48643092 gg 48643093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 315 - 396
Target Start/End: Original strand, 48643159 - 48643240
Alignment:
Q  315 ctcaacactaatttttgagctacttaacttcataatcaaccaagtcatatatattaatatattcaacactaaaatcatcaca 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48643159 ctcaacactaatttttgagctacttaacttcataatcaaccaagtcatatatattaatatattcaacactaaaatcatcaca 48643240  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 419 - 461
Target Start/End: Original strand, 48643260 - 48643302
Alignment:
Q  419 cagaagtttgaacggaaccttacatatattatgcattgtctct 461  Q
    |||||||||||||| |||||||||||||||||||||| |||||    
T  48643260 cagaagtttgaacgaaaccttacatatattatgcattatctct 48643302  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 461
Target Start/End: Complemental strand, 23221440 - 23221412
Alignment:
Q  433 gaaccttacatatattatgcattgtctct 461  Q
    |||||||||||||||||||||||||||||    
T  23221440 gaaccttacatatattatgcattgtctct 23221412  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 461
Target Start/End: Complemental strand, 4826338 - 4826310
Alignment:
Q  433 gaaccttacatatattatgcattgtctct 461  Q
    |||||||||||||||||||||||||||||    
T  4826338 gaaccttacatatattatgcattgtctct 4826310  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 434 - 462
Target Start/End: Original strand, 11241999 - 11242027
Alignment:
Q  434 aaccttacatatattatgcattgtctctg 462  Q
    |||||||||||||||||||||||||||||    
T  11241999 aaccttacatatattatgcattgtctctg 11242027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 461
Target Start/End: Complemental strand, 13401645 - 13401617
Alignment:
Q  433 gaaccttacatatattatgcattgtctct 461  Q
    |||||||||||||||||||||||||||||    
T  13401645 gaaccttacatatattatgcattgtctct 13401617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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