View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8164_high_4 (Length: 236)

Name: NF8164_high_4
Description: NF8164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8164_high_4
NF8164_high_4
[»] chr2 (3 HSPs)
chr2 (9-219)||(37784335-37784547)
chr2 (42-94)||(2758461-2758513)
chr2 (42-94)||(26179622-26179674)
[»] chr5 (3 HSPs)
chr5 (21-146)||(11768411-11768538)
chr5 (43-159)||(39985350-39985467)
chr5 (177-214)||(11768598-11768635)
[»] chr3 (2 HSPs)
chr3 (21-146)||(36073798-36073924)
chr3 (128-219)||(55350295-55350385)
[»] chr4 (1 HSPs)
chr4 (43-159)||(11960113-11960229)
[»] chr8 (1 HSPs)
chr8 (33-173)||(30714-30856)
[»] chr1 (1 HSPs)
chr1 (43-118)||(19986871-19986946)


Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 9 - 219
Target Start/End: Complemental strand, 37784547 - 37784335
Alignment:
Q  9 tgggtagattatactaacctcctctaaggttgacttaaataacataaacaccccctctaatttcaaaccagacactaacctcccttattttagtatcaaa 108  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  37784547 tgggtaaattatactaacctcccctaaggttgacttaaataacataaacacccactctaatttcaaaccagacactaacctcccttattttagtatcaaa 37784448  T
Q  109 ttaacaaacacctctcttccatcttaacaccattaaatctctgttaac--tctcactttccctcacattgttatgagctcttctacttcacttcattgtt 206  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37784447 ttaacaaactcctcccttccatcttaacaccattaaatctctgttaactctctcactttccctcacattgttatgagctcttctacttcacttcattgtt 37784348  T
Q  207 gaacatttcttct 219  Q
    |||||||||||||    
T  37784347 gaacatttcttct 37784335  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 2758513 - 2758461
Alignment:
Q  42 cttaaataacataaacaccccctctaatttcaaaccagacactaacctccctt 94  Q
    |||||||||||  |||| |||||||||||| |||| | |||||||||||||||    
T  2758513 cttaaataacactaacatcccctctaattttaaactaaacactaacctccctt 2758461  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 26179674 - 26179622
Alignment:
Q  42 cttaaataacataaacaccccctctaatttcaaaccagacactaacctccctt 94  Q
    ||||||||||| |||||||||||||| ||| |||| | |||| ||||||||||    
T  26179674 cttaaataacacaaacaccccctctagttttaaactaaacacaaacctccctt 26179622  T

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Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 146
Target Start/End: Original strand, 11768411 - 11768538
Alignment:
Q  21 actaacctcctctaaggttgacttaaataacataaacaccccctctaatttcaaaccagacactaacctcccttattttagtatcaaat--taacaaaca 118  Q
    |||||||||| ||||||||| ||||||||||| |||   |||||||| ||| ||| || ||||||||||||||||||||  ||||||||    ||| |||    
T  11768411 actaacctcccctaaggttgtcttaaataacacaaaactcccctctagttttaaatcaaacactaacctcccttattttgttatcaaatggacacacaca 11768510  T
Q  119 cctctcttccatcttaacaccattaaat 146  Q
    |||| |||||||||||||||||||||||    
T  11768511 cctcccttccatcttaacaccattaaat 11768538  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 159
Target Start/End: Complemental strand, 39985467 - 39985350
Alignment:
Q  43 ttaaataacataaacaccccctctaatttcaaaccagacactaacctccctta-ttttagtatcaaattaacaaacacctctcttccatcttaacaccat 141  Q
    ||||||| |||||||||||||| || ||| |||| | |||| ||||||||||| ||||  ||||||||| ||||||||| | ||||||  |||||||| |    
T  39985467 ttaaatagcataaacaccccctttagttttaaactaaacacaaacctcccttattttttttatcaaattgacaaacaccacccttccactttaacaccgt 39985368  T
Q  142 taaatctctgttaactct 159  Q
    | |||| | |||||||||    
T  39985367 ttaatcaccgttaactct 39985350  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 214
Target Start/End: Original strand, 11768598 - 11768635
Alignment:
Q  177 ttatgagctcttctacttcacttcattgttgaacattt 214  Q
    |||||||||||| ||||||||||||||||| |||||||    
T  11768598 ttatgagctcttttacttcacttcattgttcaacattt 11768635  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 146
Target Start/End: Original strand, 36073798 - 36073924
Alignment:
Q  21 actaacctcctctaaggttgacttaaataacataaacacc-ccctctaatttcaaaccagacactaacctcccttattttagtatcaaattaacaaacac 119  Q
    ||||||||||  |||  ||| ||||||||||| ||| ||  ||||||| ||| ||| || ||||||||||||||||||||  || |||||  ||| ||||    
T  36073798 actaacctcccttaaaattgtcttaaataacacaaatacttccctctagttttaaatcaaacactaacctcccttattttgttaccaaatagacacacac 36073897  T
Q  120 ctctcttccatcttaacaccattaaat 146  Q
    ||| |||||||||||||||||||||||    
T  36073898 ctcccttccatcttaacaccattaaat 36073924  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 219
Target Start/End: Complemental strand, 55350385 - 55350295
Alignment:
Q  128 catcttaacaccattaaatctctgttaactctcac--tttccctcacattgttatgagctcttctacttcacttcattgttgaacatttcttct 219  Q
    |||||||||||| |||||||||| |||||||||||  |||| ||||| ||   |||||||||| || |||||||||||||| ||||||| ||||    
T  55350385 catcttaacaccgttaaatctctcttaactctcacactttcactcacttt---atgagctcttttatttcacttcattgttcaacattttttct 55350295  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 159
Target Start/End: Original strand, 11960113 - 11960229
Alignment:
Q  43 ttaaataacataaacaccccctctaatttcaaaccagacactaacctcccttattttagtatcaaattaacaaacacctctcttccatcttaacaccatt 142  Q
    ||||||| || |||||||||||||| ||| |||| | |||| |||||||||||||||  ||||||||| | ||||||| | ||||||  |||||||| ||    
T  11960113 ttaaatagcacaaacaccccctctagttttaaactaaacacaaacctcccttattttgttatcaaattgaaaaacaccacccttccactttaacaccgtt 11960212  T
Q  143 aaatctctgttaactct 159  Q
     |||| | |||||||||    
T  11960213 taatcaccgttaactct 11960229  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 173
Target Start/End: Complemental strand, 30856 - 30714
Alignment:
Q  33 taaggttgacttaaataacataaacaccccctctaatttcaaaccagacactaacctcccttattttagtatcaaattaacaaacacctctcttccatct 132  Q
    |||||||  ||||||||||| ||| ||||||| || ||| |||| | |||||||||||||||||||   ||||||||| ||||| || || |||| | ||    
T  30856 taaggttttcttaaataacaaaaagaccccctttagttttaaactaaacactaacctcccttatttagttatcaaattgacaaatacttcccttcaacct 30757  T
Q  133 taacaccattaaatctctgttaac--tctcactttccctcaca 173  Q
    |||||| |||||||| | |||| |  |||||||||| ||||||    
T  30756 taacactattaaatcaccgttatctttctcactttcactcaca 30714  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 118
Target Start/End: Complemental strand, 19986946 - 19986871
Alignment:
Q  43 ttaaataacataaacaccccctctaatttcaaaccagacactaacctcccttattttagtatcaaattaacaaaca 118  Q
    ||||||| || ||||||| |||||| ||| |||| | | || |||||||||||||||| ||| |||||||||||||    
T  19986946 ttaaatagcacaaacacctcctctagttttaaactaaatacaaacctcccttattttattattaaattaacaaaca 19986871  T

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