View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8164_low_11 (Length: 205)
Name: NF8164_low_11
Description: NF8164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8164_low_11 |
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| [»] chr7 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 3 - 205
Target Start/End: Original strand, 8553187 - 8553389
Alignment:
| Q |
3 |
cttggtaagtgattttgcctcgattacacctgtcggtaaatcatagcatttgccatgaccttcctcaatgtagttgggaccacatggcaaacaaagctct |
102 |
Q |
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| T |
8553187 |
cttggtaagtgattttgcttcgattacacctgtcggtaaaacatagcatttgccatgaccttcctcaatgtagttgggaccacatggcaaacaaagctct |
8553286 |
T |
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| Q |
103 |
actacttcaacaccacttccacttgccgacttcaaccaaagatcaacatgctttgacatgtaatgaagctcaaaacggttcaatataatcttacattctt |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8553287 |
actacttcaacaccacttccacttgccgacttcaaccaaagatcaacatgctttgacatgtaatgaagctcaaaacggttcaatataatcttacattctt |
8553386 |
T |
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| Q |
203 |
tga |
205 |
Q |
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||| |
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| T |
8553387 |
tga |
8553389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 165
Target Start/End: Complemental strand, 5176950 - 5176892
Alignment:
| Q |
107 |
cttcaacaccacttccacttgccgacttcaaccaaagatcaacatgctttgacatgtaa |
165 |
Q |
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| T |
5176950 |
cttcaacaccacattcacttgctaacttcaaccaaagatcaatatcctttaacatgtaa |
5176892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 49610550 - 49610346
Alignment:
| Q |
1 |
aacttggtaagtgattttgcctcgattacacctgtcggtaaatcatagcatttgccatgaccttcctcaatgtagttgggaccacatggcaaacaaagct |
100 |
Q |
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| T |
49610550 |
aacttggtaagtgattttgcttcaattacacccatcggtaatacatagcattcgtcatgaccttcctcgtcatggttgggaccactgggcaaacaaagtt |
49610451 |
T |
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| Q |
101 |
ctactacttcaacaccacttccacttgccgacttcaaccaaagatcaacatgctttgacatgtaatgaagctcaaaacggttcaatataatcttacattc |
200 |
Q |
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||| |||||||||||||||| |||||| ||| |||||||||| || ||||| |||||||||| |||||||||||||| |||||||| ||||||||||||| |
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| T |
49610450 |
ctagtacttcaacaccactttcacttgtcgatttcaaccaaaaattaacatcctttgacatgcaatgaagctcaaaatggttcaatgtaatcttacattc |
49610351 |
T |
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| Q |
201 |
tttga |
205 |
Q |
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||||| |
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| T |
49610350 |
tttga |
49610346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 3e-22; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 88 - 177
Target Start/End: Complemental strand, 5203544 - 5203455
Alignment:
| Q |
88 |
ggcaaacaaagctctactacttcaacaccacttccacttgccgacttcaaccaaagatcaacatgctttgacatgtaatgaagctcaaaa |
177 |
Q |
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| T |
5203544 |
ggcaaacaaagctctagtaattcaacaccacattcacttgctaacttcaaccaatgatcaacatcttttgacatgtaatgaagctcaaaa |
5203455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 106 - 177
Target Start/End: Complemental strand, 5170229 - 5170158
Alignment:
| Q |
106 |
acttcaacaccacttccacttgccgacttcaaccaaagatcaacatgctttgacatgtaatgaagctcaaaa |
177 |
Q |
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| T |
5170229 |
acttcaacaccactttgacttgccaacttcaaccaatgatcaacatccattgacatgtaaggaagctcaaaa |
5170158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 75 - 148
Target Start/End: Complemental strand, 6230046 - 6229973
Alignment:
| Q |
75 |
gttgggaccacatggcaaacaaagctctactacttcaacaccacttccacttgccgacttcaaccaaagatcaa |
148 |
Q |
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| T |
6230046 |
gttgggaccattaggcaaacaaagttgtagtacttcaacaccactttcacttgccaacttcaaccaaagatcaa |
6229973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 88 - 151
Target Start/End: Complemental strand, 5193306 - 5193243
Alignment:
| Q |
88 |
ggcaaacaaagctctactacttcaacaccacttccacttgccgacttcaaccaaagatcaacat |
151 |
Q |
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|||||| |||| |||| |||||||||||||||| ||| |||| ||||||||||||||||||||| |
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| T |
5193306 |
ggcaaataaaggtctagtacttcaacaccactttcacctgccaacttcaaccaaagatcaacat |
5193243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 177
Target Start/End: Complemental strand, 5174416 - 5174327
Alignment:
| Q |
88 |
ggcaaacaaagctctactacttcaacaccacttccacttgccgacttcaaccaaagatcaacatgctttgacatgtaatgaagctcaaaa |
177 |
Q |
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||||||||||| |||| |||||||||||||| | |||||||| ||||||||||||||||||| | |||||| || ||||||||||| |
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| T |
5174416 |
ggcaaacaaagttctagtacttcaacaccacattcacttgccagattcaaccaaagatcaacatccgctgacattgaacgaagctcaaaa |
5174327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 162
Target Start/End: Complemental strand, 5186492 - 5186445
Alignment:
| Q |
115 |
ccacttccacttgccgacttcaaccaaagatcaacatgctttgacatg |
162 |
Q |
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|||||| |||||||| ||||||||||||||||||||| |||||||||| |
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| T |
5186492 |
ccactttcacttgccaacttcaaccaaagatcaacattctttgacatg |
5186445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 115 - 162
Target Start/End: Complemental strand, 6233162 - 6233115
Alignment:
| Q |
115 |
ccacttccacttgccgacttcaaccaaagatcaacatgctttgacatg |
162 |
Q |
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|||||| || ||||| ||||||||||||||||||||| |||||||||| |
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| T |
6233162 |
ccactttcatttgccaacttcaaccaaagatcaacattctttgacatg |
6233115 |
T |
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