View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8164_low_5 (Length: 270)
Name: NF8164_low_5
Description: NF8164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8164_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 16 - 263
Target Start/End: Original strand, 9665234 - 9665481
Alignment:
| Q |
16 |
acatcacttataccggtcatgtatccacctcaaatctcaccctacctaacacatattacattcctaacttgacacttaatcttatttctgttggtcaatt |
115 |
Q |
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| T |
9665234 |
acatcactcataccggtcatgtatccacctcaaatctcaccctgcctgacacatattacattcctaacttgacacttaatcttatttttgttggtcaatt |
9665333 |
T |
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| Q |
116 |
gtgtgaacaaggactgaatgttgatttttcaacatctggtgttcaggtacaggatccacagacgaagcagatcattgggatgggtcacagggtgggttgg |
215 |
Q |
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| T |
9665334 |
gtgtgaacaaggactgaatgtttatttttcaacatctggtgttcaggtacaggatccacagacgaagcagatcattgggatgggtcgcagggtgggtcgg |
9665433 |
T |
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| Q |
216 |
ttatttgagctccaatctctccaccttcctaaagatcatatctctgct |
263 |
Q |
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| T |
9665434 |
ttatttgagctccaatctctccaccttcctaaagatcatatctttgct |
9665481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 161 - 263
Target Start/End: Original strand, 11350953 - 11351055
Alignment:
| Q |
161 |
ggtacaggatccacagacgaagcagatcattgggatgggtcacagggtgggttggttatttgagctccaatctctccaccttcctaaagatcatatctct |
260 |
Q |
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| T |
11350953 |
ggtataggatccacagacgaagcagatcattgggacgggtcgcagggtgggtcggttatttgagctccaatctctccaccttcctaaagatcatatctct |
11351052 |
T |
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| Q |
261 |
gct |
263 |
Q |
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||| |
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| T |
11351053 |
gct |
11351055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 12617358 - 12617584
Alignment:
| Q |
18 |
atcacttataccggtcatgtatccacctcaaatctcaccctacctaacacatattacattcctaacttgacacttaatcttatttctgttggtcaattgt |
117 |
Q |
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|||||| |||| ||||||||||||||||||| ||||| || ||| ||| |||| ||| | ||||||||||||||||||||||||||||| ||||||| |
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| T |
12617358 |
atcactcatactagtcatgtatccacctcaaacctcactcttccttacatctattgcatacagaacttgacacttaatcttatttctgttggccaattgt |
12617457 |
T |
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| Q |
118 |
gtgaacaaggactgaatgttgatttttcaacatctggtgttcaggtacaggatccacagacgaagcagatcattgggatgggtcacagggtgggttggtt |
217 |
Q |
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|||||||||||| |||||| ||||||| | || ||||| || |||| ||| ||| ||||| || |||||||||| ||| |||||||||| || |
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| T |
12617458 |
gtgaacaaggacaaaatgtttatttttctccttcaggtgtccatgtacttaatctacaaacgaaacatatcattgggacatgtcgcagggtgggtctatt |
12617557 |
T |
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| Q |
218 |
atttgagctccaatctctccaccttcc |
244 |
Q |
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| T |
12617558 |
atttgagcttcaatctcttcatcttcc |
12617584 |
T |
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