View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8164_low_9 (Length: 228)
Name: NF8164_low_9
Description: NF8164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8164_low_9 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 2 - 228
Target Start/End: Complemental strand, 7310246 - 7310020
Alignment:
| Q |
2 |
caatattctataaatctgatcacaaagtctgatgcatccagttctgatttagggtcatgttactaatgcatctgaaaatgaattagaagagtttcggaaa |
101 |
Q |
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| T |
7310246 |
caatattctataaatctgatcacaaagtctgatgcatccagttctgatttagggtcatgttactgatgcatctgaaaatgaattagaagaacttcggaaa |
7310147 |
T |
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| Q |
102 |
cttgataatggggaaaactctattatcaaattccatctttcccaagttaattacctcctttgtacagatctgattgttccaagtactacattttgtaact |
201 |
Q |
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| T |
7310146 |
cttgagaaaggggaaaactttattatcaaattccatctttcccaagttaattacttcctttgttcagatctgattgttccaagcactacattttgtaact |
7310047 |
T |
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| Q |
202 |
tgtgggcaggctataatcttgagaata |
228 |
Q |
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||| ||||||||||||||||||||||| |
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| T |
7310046 |
tgttggcaggctataatcttgagaata |
7310020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 126
Target Start/End: Original strand, 7329734 - 7329857
Alignment:
| Q |
2 |
caatattctataaatctgatcacaaagtctgatgcatccagttctgatttagggtcatgttactaatgcatctgaaaatgaattagaagagtttcggaaa |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||| |||||||| | | || || ||||| |
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| T |
7329734 |
caatattctataaatctgatcacaaagtctgatgcatccagttctgatttaaggtcatgtaactaatgaatctg-aaatgaatgaaatgaactttggaaa |
7329832 |
T |
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| Q |
102 |
cttgataatggggaaaactctatta |
126 |
Q |
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| T |
7329833 |
cttgagaatgaggaaaactctatta |
7329857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 7300897 - 7300843
Alignment:
| Q |
27 |
agtctgatgcatccagttctgatttagggtcatgttactaatgcatctgaaaatg |
81 |
Q |
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| T |
7300897 |
agtctgatgcatccagttctgatttagggtcatgttactaatgcatccgaaaatg |
7300843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 13898963 - 13899003
Alignment:
| Q |
41 |
agttctgatttagggtcatgttactaatgcatctgaaaatg |
81 |
Q |
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| T |
13898963 |
agttctgatttagggtcaagttactaatgcatatgaaaatg |
13899003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 80
Target Start/End: Original strand, 13569143 - 13569182
Alignment:
| Q |
41 |
agttctgatttagggtcatgttactaatgcatctgaaaat |
80 |
Q |
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| T |
13569143 |
agttctgatttagggtcaagttactaatgcatatgaaaat |
13569182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 24552799 - 24552759
Alignment:
| Q |
41 |
agttctgatttagggtcatgttactaatgcatctgaaaatg |
81 |
Q |
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| T |
24552799 |
agttctgatttagggtcaagttactaatgcatatgaaaatg |
24552759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 23964003 - 23964039
Alignment:
| Q |
41 |
agttctgatttagggtcatgttactaatgcatctgaa |
77 |
Q |
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| T |
23964003 |
agttctgatttaggctcaagttactaatgcatctgaa |
23964039 |
T |
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