View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8165_low_1 (Length: 239)
Name: NF8165_low_1
Description: NF8165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8165_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 17 - 177
Target Start/End: Complemental strand, 11323795 - 11323635
Alignment:
| Q |
17 |
accactacctccttttatagcacttttattaccactaagcactgctaaaaagttttccagatttccataatctccaatataatcctacaagtttcacaat |
116 |
Q |
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| T |
11323795 |
accactacctccttttgtagcacttttattaccactaagcactgctaaaaagttttccagatttccataatctccgatataatcctacaagtttcacaat |
11323696 |
T |
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| Q |
117 |
ccatatgcgtatcacttatactttaagaccattaaagagtactccaaaaagactcgttagt |
177 |
Q |
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| T |
11323695 |
acatgagcgtatcacttataatttaacaccattaaagagtactccaaaaaaactcgttagt |
11323635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 11323609 - 11323557
Alignment:
| Q |
182 |
aatacagaaccacgaagaaagagatggagacatatatgtaccttaggaactcc |
234 |
Q |
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| T |
11323609 |
aatatagaactacgaagaaagagatggagacatatatgtaccttgggaactcc |
11323557 |
T |
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