View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8166_high_1 (Length: 635)
Name: NF8166_high_1
Description: NF8166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8166_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 10 - 468
Target Start/End: Original strand, 33176359 - 33176807
Alignment:
| Q |
10 |
gtagcagagacaaagcacttgtcttgaagatggttcttgggnnnnnnnnnn-ttgggatatcattgtctattttactaatggaattccaaacccttagaa |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33176359 |
gtagcagagacaaagcacttgtcttgaagatggttcttcggaagaaaaaaaattgggatatcattgtctattttactaatggaattccaaacccttagaa |
33176458 |
T |
|
| Q |
109 |
tatattgataggtaattgatgtattgggattattttgatgggtggtgtactgcttatacttcatctattataattgacttagtatcacttcttctactta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33176459 |
tatattgataggtaattgatgtattgggattagtttgatgggtggtgtactgcttatacttcatctattataattgacttagtatcacttcttctactta |
33176558 |
T |
|
| Q |
209 |
tattttatctatttgaataaaagaattttgtttgccattaaaaagaagtgtgagtaataatttcgcattggccataaatgtgagagttgagtaacatata |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33176559 |
tattttatctatttgaataaaagaattttgtttgccattaaaaagaagtgtgagtaataatttcgcattggccataaatgtgagagttgagtaacatata |
33176658 |
T |
|
| Q |
309 |
aataaatagatatctttacaaaatgtctcaaagtttttcaatgtcctccaaatgacttgtattgctgcatttaagcatagtacattgattccccaaaact |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || | | |||||||||||||||| ||| |
|
|
| T |
33176659 |
aataaatagatatctttacaaaatgtctcaaagtttttcaatgtcctccaaataacttgtat-----------agtacattacattgattccccaatact |
33176747 |
T |
|
| Q |
409 |
cgaacacggagttgacttcttaaatatggnnnnnnncaattgttgtgatgcatctcaacc |
468 |
Q |
| |
|
||||||||||||||||||||||| | ||| |||||||||||| ||||||||||| |
|
|
| T |
33176748 |
cgaacacggagttgacttcttaagtctggaaaaaaacaattgttgtgaggcatctcaacc |
33176807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 544 - 613
Target Start/End: Original strand, 33176883 - 33176952
Alignment:
| Q |
544 |
gttattttacaactgtattttcaatgagatttaaacctgatctttaagatacaagataagataatagtca |
613 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
33176883 |
gttattttacaactgtattttcaatgagatttaaacctggtctttaagatacaagataagataatagtca |
33176952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University