View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8166_high_19 (Length: 239)
Name: NF8166_high_19
Description: NF8166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8166_high_19 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 29368556 - 29368778
Alignment:
| Q |
1 |
tgggagttatgtgaaattgtgtctaaattatggttatgaaatttttaacatgccaacatggtttgaaaccacaactttggattttagtaagataatccaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
29368556 |
tgggagttatgtgaaattgtgtctaaatcatggttatgaaatttttaacatgccaacatggtttgaaaccacaactttggtttttagtaagataatccaa |
29368655 |
T |
|
| Q |
101 |
agaaatatactatgatcatccaagatattaagaaaatacttacgaccatgtacattataagaagtataaatagggtcccaaatatcaaagcaaatacgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29368656 |
agaaatatactatgatcatccaagatattaagaaaatacttacgaccatgcac---ataagaagtataaatagggtcccaaatatcaaagcaaatacgtt |
29368752 |
T |
|
| Q |
201 |
cgaaattgacggatgcatgagaatga |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
29368753 |
cgaaattgacggatgcatgagaatga |
29368778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University