View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8166_high_22 (Length: 214)
Name: NF8166_high_22
Description: NF8166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8166_high_22 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 5560387 - 5560189
Alignment:
| Q |
16 |
gtcattgtgagtgactacactgctcttcttcaccgaaacttctcttatactattgcaccttggggaagagtaaaatttcaactatataataccaccattt |
115 |
Q |
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| T |
5560387 |
gtcattgtgagtgaccacactgctcttcttcaacgaaacttctcttatactattgcaccttggggaagagtaaaatttcaactatataataccaccattt |
5560288 |
T |
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| Q |
116 |
atcacatacatcatatatatcaaactaaaattgtgtccgagagtaattaattagaatgagagcaatgagaattatattagtttcattccttctctgcta |
214 |
Q |
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| T |
5560287 |
atcacatacatcatatatatcaaactaaaattgtgtccgagagtaattaattagaatgagagcaatgagaattatattagtttcattccttctctgcta |
5560189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 102 - 208
Target Start/End: Complemental strand, 5585839 - 5585744
Alignment:
| Q |
102 |
taataccaccatttatcacatacatcatatatatcaaactaaaattgtgtccgagagtaattaattagaatgagagcaatgagaattatattagtttcat |
201 |
Q |
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| T |
5585839 |
taataccaccatttatcacata---tacatatatcaaactaaaattgtgtccgag------taattaga--gagagcaatgagaatcacattagtttcat |
5585751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 109 - 152
Target Start/End: Original strand, 5894140 - 5894183
Alignment:
| Q |
109 |
accatttatcacatacatcatatatatcaaactaaaattgtgtc |
152 |
Q |
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| T |
5894140 |
accatttatcacatacatcatatacatcaaactaaaattgtgtc |
5894183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 5894059 - 5894104
Alignment:
| Q |
21 |
tgtgagtgactacactgctcttcttcaccgaaacttctcttatact |
66 |
Q |
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| T |
5894059 |
tgtgagtgaccacactgctcttcttcaaagaaacttctcttgtact |
5894104 |
T |
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