View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8166_high_6 (Length: 405)
Name: NF8166_high_6
Description: NF8166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8166_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 2250112 - 2249713
Alignment:
| Q |
1 |
gtgatacctatgagtactcacccaatcaattggatttccctgcacatcaaaaccaaaacaacatttcatat--tcccttcaataagaaaactatgaagaa |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2250112 |
gtgatacctatgagtactcacccaatcaattggatttccctgcacatcaaaatcaaaacaacatttcatatattcccttcaataagaaaactatgaagaa |
2250013 |
T |
|
| Q |
99 |
tataaaaagatgttagaattagtaggagattattaaagatagttaaaacttagttaggattgaatttggattccctgccaccaggggatctcacattcaa |
198 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2250012 |
taaaaaaagatgttagaattagtaggagattattaaagatagttaaaactaagttaggattgaatttggattccctgccacccggggatctcacattcaa |
2249913 |
T |
|
| Q |
199 |
gacatcagtga--------tagttcgatctagattaaacggtccaaacaaatgcaagactttaattttacaatttaaaatataaagtttgaatttgaatc |
290 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2249912 |
gacatcagtgatagtgtgatagttcgatctagattaaacggtccaaacaaaagcaagactttaattttacaatttaaaatataaagtttgaatttgaatc |
2249813 |
T |
|
| Q |
291 |
gtatgatcttgatcaaacgaccaccaatgtcctgtctccatgaatgctagaaaatcccaaccgtggagattctaaatgcggttgggacactatataaagt |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2249812 |
gtatgatcttgatcaaacgaccaccaatgtcctgtctccatgaatgctagaaaatcccaaccgtggagattctaaatgcggttgggacactatataaagt |
2249713 |
T |
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