View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8166_low_10 (Length: 401)

Name: NF8166_low_10
Description: NF8166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8166_low_10
NF8166_low_10
[»] chr1 (1 HSPs)
chr1 (16-384)||(7172601-7172960)


Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 384
Target Start/End: Original strand, 7172601 - 7172960
Alignment:
Q  16 atgaaagaaaaagcccattttgaactacaaacaagaacaagaacatatgtccacaccacacaatctcaaattctcatatctaatctcatctgcnnnnnnn 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  7172601 atgaaagaaaaagcccattttgaactacaaacaagaacaagaacatatgtccacaccacacaatctcaaattctcatatctaatctcatctgcaaaaaaa 7172700  T
Q  116 tggcgcagtgcattaccaatacctttattcaaggaaaaccattccttccacttcccacaaaaaacgtagtaaccaaccacttccttaaaatttccaatta 215  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  7172701 tggcgcagtgcattaccaatacctttgttcaaggaaaaccattccttccacttcccacaaaaaacgtagtaaccaaccacttccttaaaatttcca---- 7172796  T
Q  216 ttcatattattgtttctgtattaaactaaccaacatgnnnnnnnnngtagttgcagaatcaacaaggnnnnnnngtgggaaatttcggagtgtattgtaa 315  Q
         ||||||||||||||||||||||||||||||||         |||||||||||||||| ||||       ||||| ||||||||||||||||||||    
T  7172797 -----attattgtttctgtattaaactaaccaacatgtttttttttgtagttgcagaatcaaaaaggaaaaaaagtgggcaatttcggagtgtattgtaa 7172891  T
Q  316 gaagaaagacatacacccaaaattccatgaagatgctaaggtttactgtaataacgagcttgtgatgac 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7172892 gaagaaagacatacacccaaaattccatgaagatgctaaggtttactgtaataacgagcttgtgatgac 7172960  T

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