View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8166_low_12 (Length: 317)
Name: NF8166_low_12
Description: NF8166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8166_low_12 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 4 - 317
Target Start/End: Original strand, 1501892 - 1502218
Alignment:
| Q |
4 |
ctatggtagagtagaataattttctttgaaaaagggactttttaaagctagtactattattattcttagtgtaat---tattatggtcgagacatcaaaa |
100 |
Q |
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| T |
1501892 |
ctatggtagagtagaataattttcta-gaaaaaaggactttttaaagctagtactattattattcttactgtaataattattatggtcgagacatcaaaa |
1501990 |
T |
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| Q |
101 |
tctctatagttcatgatttgatatatgatattatttttcttggtaaaaatatatttaaccctatcttttaaaaaattagttacactgtcggtgtatgttt |
200 |
Q |
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| T |
1501991 |
tctctatagttcatgatttgatatatgatattatttttcttggtaaaaatatatttaaccctatcttttaaaaaattagttacactgtcggtgtatgttt |
1502090 |
T |
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| Q |
201 |
attttactctatttagaaaatgtggagaaggccataataaagacatcctttggatccaataaagcaatc-----------atagaagaagcattttgtca |
289 |
Q |
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| T |
1502091 |
attttactctatttagaaaatgtggagaaggctataataaagacatcctttggatccaataaagcaatcatatatgatatatagaagaagcattttgtca |
1502190 |
T |
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| Q |
290 |
cttaaagtaagattcttgagtacattat |
317 |
Q |
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| T |
1502191 |
cttaaagtaagattcttgagtacattat |
1502218 |
T |
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