View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8166_low_13 (Length: 307)
Name: NF8166_low_13
Description: NF8166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8166_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 71 - 298
Target Start/End: Complemental strand, 55451813 - 55451587
Alignment:
| Q |
71 |
catcattttgatatattttgttacttactgttatggttcattcatactgataacaacaagagtgttttgatatgatcaaaaggaaaaatatagcaataac |
170 |
Q |
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| T |
55451813 |
catcattttgatatattttgttacttactgttatggttcattcatactgataacaacaagagtgttttgatatgatcaaaaggaaaaatatagcaataac |
55451714 |
T |
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| Q |
171 |
atcattaaaatcagtgatagaaatgacgtatatagatagattttgaagatgatcttgccatcaaatcaaatctgaatgtacacgcggttgtgaaactatc |
270 |
Q |
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| T |
55451713 |
atcattaaaatcagtgatagaaatgacgtatatagatagattttgaagatgatcttgccatcaaatcaaatctgaatgtacacgcggttgtgaaactatc |
55451614 |
T |
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| Q |
271 |
tatactaagggtggctagtaacgcattc |
298 |
Q |
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|||||| ||||||| ||||||||||||| |
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| T |
55451613 |
tatactcagggtgg-tagtaacgcattc |
55451587 |
T |
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