View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8166_low_17 (Length: 270)
Name: NF8166_low_17
Description: NF8166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8166_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 40805369 - 40805595
Alignment:
| Q |
1 |
tcttaagacttgacaacatcatgtcaaaaactcgagctactgtaaaaaattgctctgctgtaccacaaacataagctagaccagcattgtctaacaacat |
100 |
Q |
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| T |
40805369 |
tcttaagacttgacaacatcatgtcaaaaactcgagctactgtaaaaaattgctctgctgtatcacaaacataagctagaccagcattgtctaacaacat |
40805468 |
T |
|
| Q |
101 |
tttctgaatgataaatgttccaacctgcattgatatacaactttataagcagatatcaacagcaaaagtggatgnnnnnnnnntaaagaagaaaataaca |
200 |
Q |
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| T |
40805469 |
tttctgaatgataaatgttccaacctgcattgatatacaactttataagcagatatcaacagcaaaagtggatgacaaaaaaataaagaagaaaataaca |
40805568 |
T |
|
| Q |
201 |
acccagtcaaattcatataaactaaat |
227 |
Q |
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| T |
40805569 |
acccagtcaaattcatataaactaaat |
40805595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 253
Target Start/End: Original strand, 40805602 - 40805636
Alignment:
| Q |
219 |
aaactaaattggcaaaaacaacaacaatagaggaa |
253 |
Q |
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| T |
40805602 |
aaactaaattggcaaaaacaacaacaatagaggaa |
40805636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 16340433 - 16340492
Alignment:
| Q |
85 |
cattgtctaacaacattttctgaatgataaatgttccaacctgcattgatatacaacttt |
144 |
Q |
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| T |
16340433 |
cattgtctaactacattttctgaattataaatgttccaacctgtatagataaacaacttt |
16340492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 16333513 - 16333577
Alignment:
| Q |
80 |
accagcattgtctaacaacattttctgaatgataaatgttccaacctgcattgatatacaacttt |
144 |
Q |
| |
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| T |
16333513 |
accaacattgtctaacaacattttcttaattataaatattccaacgtgcatagatatataacttt |
16333577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 139
Target Start/End: Complemental strand, 16341760 - 16341626
Alignment:
| Q |
5 |
aagacttgacaacatcatgtcaaaaactcgagctactgtaaaaaattgctctgctgtaccacaaacataagctagaccagcattgtctaacaacattttc |
104 |
Q |
| |
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| T |
16341760 |
aagacttgtcaacatcatgtccaaaagtcgtgttacggatgaaaattgctctcttgtatcataaacatatgccaaactatcattgtctaacaatattttt |
16341661 |
T |
|
| Q |
105 |
tgaatgataaatgttccaacctgcattgatataca |
139 |
Q |
| |
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| T |
16341660 |
tgaatcataaaagcttcaacctgcatagatataca |
16341626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 16334662 - 16334541
Alignment:
| Q |
19 |
tcatgtcaaaaactcgagctactgtaaaaaattgctctgctgtaccacaaacataagctagaccagcattgtctaacaacattttctgaa-tgataaatg |
117 |
Q |
| |
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||||||| |||| ||| ||||| | |||||||||| || | || |||||||||||| |||| | ||| ||||||||| ||||| | || | ||||||| |
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| T |
16334662 |
tcatgtccaaaagtcgtgctacagctaaaaattgctttgttttatcacaaacataagtcagactatcatcgtctaacaatatttttttaaattataaatg |
16334563 |
T |
|
| Q |
118 |
ttccaacctgcattgatataca |
139 |
Q |
| |
|
||||||||| ||| |||||||| |
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| T |
16334562 |
ttccaacctacatagatataca |
16334541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 16332546 - 16332494
Alignment:
| Q |
91 |
ctaacaacattttctgaatgataaatgttccaacctgcattgatatacaactt |
143 |
Q |
| |
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|||| |||||||| |||| ||||||||||||||| |||| |||||||||||| |
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| T |
16332546 |
ctaaaaacattttttgaagtataaatgttccaaccagcatagatatacaactt |
16332494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 118
Target Start/End: Complemental strand, 45160899 - 45160796
Alignment:
| Q |
15 |
aacatcatgtcaaaaactcgagctactgtaaaaaattgctctgctgtaccacaaacataagctagaccagcattgtctaacaacattttctgaatgataa |
114 |
Q |
| |
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||||||||||| ||||||||| ||||| |||||| ||||||||||| ||||||| ||||| | |||| ||| || ||||| ||||| ||||| |||| |
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| T |
45160899 |
aacatcatgtccaaaactcgacgtactgcaaaaaaccgctctgctgtagcacaaacgtaagccaaaccatcatcatcgaacaaaattttatgaattataa |
45160800 |
T |
|
| Q |
115 |
atgt |
118 |
Q |
| |
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|||| |
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| T |
45160799 |
atgt |
45160796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 9519196 - 9519160
Alignment:
| Q |
186 |
aagaagaaaataacaacccagtcaaattcatataaac |
222 |
Q |
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|||||||||||||||||| |||||||||||||||||| |
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| T |
9519196 |
aagaagaaaataacaaccaagtcaaattcatataaac |
9519160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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