View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8166_low_18 (Length: 265)
Name: NF8166_low_18
Description: NF8166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8166_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 31550572 - 31550700
Alignment:
| Q |
18 |
gaggcaacttatatgtcccaacttttgaaagcattgaccccaactccttctggctggtctaacaaacactcatcactgtaaatggaatggcatcgtgtgc |
117 |
Q |
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| T |
31550572 |
gaggcaaattatatgtcccaacttttgaaagcattgaccccaactccttctggctggtctaac-aacactcatcactgcaattggactggcatcgtctg- |
31550669 |
T |
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| Q |
118 |
gaccaatatagacaagttgtggccatcaagctc |
150 |
Q |
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| T |
31550670 |
--ccaatctagtcaagttgtggccatcaagctc |
31550700 |
T |
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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 31550733 - 31550776
Alignment:
| Q |
212 |
ttgatctccacaacaactcactcactggtcctttaccttctatg |
255 |
Q |
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| T |
31550733 |
ttgatctccacaacaactcactcaccggttctttaccttctatg |
31550776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 31535444 - 31535392
Alignment:
| Q |
30 |
atgtcccaacttttgaaagcattgaccccaactccttctggctggtctaacaa |
82 |
Q |
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| T |
31535444 |
atgtccaaacttttgaaagcactaaccccaactccctctaactggtctaacaa |
31535392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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