View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8166_low_19 (Length: 250)
Name: NF8166_low_19
Description: NF8166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8166_low_19 |
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| [»] scaffold0329 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 29368561 - 29368323
Alignment:
| Q |
1 |
ctcccatgtatattagtactgacaatgaccctaaatttatgctcaatgaattttattcttctcatagtattatacatcaaaaatcatgtgaggaaaatcc |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29368561 |
ctcccatgtatattagtactgataatgaccctaaatttatgtttaatgaattttattcttctcatagtattatacatcaaaaatcatgtgaggaaaatcc |
29368462 |
T |
|
| Q |
101 |
acatcaaaatgtaaggtggaaagaaaacatcaaaatattctcaatgtaagaagagttttactgtttcagtcaaaattaccccctacattttggtcttatg |
200 |
Q |
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||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
29368461 |
acagcaaaatgtaaggtggaaaggaaacatcaaaatattctcaatgtaagaagagttttactgtttgagtcaaaattacccccaacattttggtcttatg |
29368362 |
T |
|
| Q |
201 |
ctatctttcatgttgtgtttctaatcaactgtgtttctt |
239 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
29368361 |
ctatctttcatgttgtgtttctaatcaactgtgtttctt |
29368323 |
T |
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Target: scaffold0329 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0329
Description:
Target: scaffold0329; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 229
Target Start/End: Original strand, 11198 - 11378
Alignment:
| Q |
50 |
attttattcttctcatagtattatacatcaaaaatcatgtgaggaaaatccacatcaaaatgtaag-gtggaaagaaaacatcaaaatattctcaatgta |
148 |
Q |
| |
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||||||| |||| ||| |||| || ||||||||||| |||| |||| ||| || ||||||| || || ||||| ||||| ||| |||||||||||||| |
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| T |
11198 |
attttatgcttcacatggtataattcatcaaaaatcttgtgttgaaactccccaacaaaatggtagagtagaaaggaaacaccaacatattctcaatgta |
11297 |
T |
|
| Q |
149 |
agaagagttttactgtttcagtcaaaattaccccctacattttggtcttatgctatctttcatgttgtgtttctaatcaac |
229 |
Q |
| |
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| |||| |||| | ||||| || ||| | || ||| | |||||||| |||||||| |||||| |||||| ||||||||| |
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| T |
11298 |
ggtagagctttattatttcaatccaaactcccaccttccttttggtcatatgctattcttcatgctgtgttcctaatcaac |
11378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 229
Target Start/End: Complemental strand, 22177033 - 22176853
Alignment:
| Q |
50 |
attttattcttctcatagtattatacatcaaaaatcatgtgaggaaaatccacatcaaaatgtaag-gtggaaagaaaacatcaaaatattctcaatgta |
148 |
Q |
| |
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||||||| |||| ||| |||| || ||||||||||| |||| |||| ||| || ||||||| || || ||||| ||||| ||| |||||||||||||| |
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| T |
22177033 |
attttatgcttcacatggtataattcatcaaaaatcttgtgttgaaactccccaacaaaatggtagagtagaaaggaaacaccaacatattctcaatgta |
22176934 |
T |
|
| Q |
149 |
agaagagttttactgtttcagtcaaaattaccccctacattttggtcttatgctatctttcatgttgtgtttctaatcaac |
229 |
Q |
| |
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| |||| |||| | ||||| || ||| | || ||| | |||||||| |||||||| |||||| |||||| ||||||||| |
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| T |
22176933 |
ggtagagctttattatttcaatccaaactcccaccttccttttggtcatatgctattcttcatgctgtgttcctaatcaac |
22176853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 228
Target Start/End: Original strand, 35087389 - 35087572
Alignment:
| Q |
46 |
atgaattttattcttctcatagtattatacatcaaaaatcatgtgaggaaaatccacatcaaaatgtaag-gtggaaagaaaacatcaaaatattctcaa |
144 |
Q |
| |
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|||| |||||| | |||||| ||||| | ||||| ||||| |||| |||| ||| || ||||||| || || || |||||||||||| |||||||||| |
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| T |
35087389 |
atgatttttatgcatctcatggtattgttcatcagaaatcttgtgttgaaactccccagcaaaatgggagagtagagagaaaacatcaacatattctcaa |
35087488 |
T |
|
| Q |
145 |
tgtaagaagagttttactgtttcagtcaaaattaccccctacattttggtcttatgctatctttcatgttgtgtttctaatcaa |
228 |
Q |
| |
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||| | |||| |||| | ||||| || ||||| || ||| | |||||||| ||||| || || |||||||||||||| ||||| |
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| T |
35087489 |
tgttggcagagctttattatttcaatccaaattgccgccttctttttggtcatatgccattttacatgttgtgtttctcatcaa |
35087572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 22643657 - 22643715
Alignment:
| Q |
164 |
tttcagtcaaaattaccccctacattttggtcttatgctatctttcatgttgtgtttct |
222 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||| || | |||| ||||||||| |
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| T |
22643657 |
tttcaatcaaaattacctcctacattttggtcttatgctgtcctccatgctgtgtttct |
22643715 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 229
Target Start/End: Original strand, 52777869 - 52778049
Alignment:
| Q |
50 |
attttattcttctcatagtattatacatcaaaaatcatgtgaggaaaatccacatcaaaatgtaag-gtggaaagaaaacatcaaaatattctcaatgta |
148 |
Q |
| |
|
||||||| |||| ||| |||| || ||||||||||| |||| |||| ||| || ||||||| || || ||||| ||||| ||| |||||||||||||| |
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| T |
52777869 |
attttatgcttcacatggtataattcatcaaaaatcttgtgttgaaactccccaacaaaatggtagagtagaaaggaaacaccaacatattctcaatgta |
52777968 |
T |
|
| Q |
149 |
agaagagttttactgtttcagtcaaaattaccccctacattttggtcttatgctatctttcatgttgtgtttctaatcaac |
229 |
Q |
| |
|
| |||| |||| | ||||| || ||| | || ||| | |||||||| |||||||| |||||| |||||| ||||||||| |
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| T |
52777969 |
ggtagagctttattatttcaatccaaactcccaccttctttttggtcatatgctattcttcatgctgtgttcctaatcaac |
52778049 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 229
Target Start/End: Original strand, 12285489 - 12285669
Alignment:
| Q |
50 |
attttattcttctcatagtattatacatcaaaaatcatgtgaggaaaatccacatcaaaatgtaag-gtggaaagaaaacatcaaaatattctcaatgta |
148 |
Q |
| |
|
||||||| |||| ||| |||| || ||||||||||| |||| ||| ||| || ||||||| || || ||||| ||||| ||| |||||||||||||| |
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|
| T |
12285489 |
attttatgcttcacatggtataattcatcaaaaatcttgtgttaaaactccccaacaaaatggtagagtagaaaggaaacaccaacatattctcaatgta |
12285588 |
T |
|
| Q |
149 |
agaagagttttactgtttcagtcaaaattaccccctacattttggtcttatgctatctttcatgttgtgtttctaatcaac |
229 |
Q |
| |
|
| |||| |||| | ||||| || ||| | || ||| | |||||||| |||||||| |||||| |||||| ||||||||| |
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|
| T |
12285589 |
ggtagagctttattatttcaatccaaactcccaccttctttttggtcatatgctattcttcatgctgtgttcctaatcaac |
12285669 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 229
Target Start/End: Complemental strand, 19586777 - 19586622
Alignment:
| Q |
75 |
catcaaaaatcatgtgaggaaaatccacatcaaaatgtaag-gtggaaagaaaacatcaaaatattctcaatgtaagaagagttttactgtttcagtcaa |
173 |
Q |
| |
|
||||||||||| |||| |||| ||| || ||||||| || || ||||| ||||| ||| | |||||||||||| | |||| |||| | ||||| || | |
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|
| T |
19586777 |
catcaaaaatcttgtgttgaaactccccaacaaaatggtagagtagaaaggaaacaccaacacattctcaatgtaggtagagctttattatttcaatcca |
19586678 |
T |
|
| Q |
174 |
aattaccccctacattttggtcttatgctatctttcatgttgtgtttctaatcaac |
229 |
Q |
| |
|
|| | || ||| | |||||||| |||||||| ||||||||||||| ||||||||| |
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|
| T |
19586677 |
aactcccaccttctttttggtcatatgctattcttcatgttgtgttcctaatcaac |
19586622 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 11924575 - 11924633
Alignment:
| Q |
170 |
tcaaaattaccccctacattttggtcttatgctatctttcatgttgtgtttctaatcaa |
228 |
Q |
| |
|
||||||||||| ||| | |||||||||||| |||| |||||||||||||||| ||||| |
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|
| T |
11924575 |
tcaaaattacctccttctttttggtcttattctatacttcatgttgtgtttcttatcaa |
11924633 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 6569631 - 6569591
Alignment:
| Q |
122 |
agaaaacatcaaaatattctcaatgtaagaagagttttact |
162 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||| |||||| |
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|
| T |
6569631 |
agaaaacatcaatatattctcaatgtaggaagagctttact |
6569591 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 155
Target Start/End: Original strand, 12301048 - 12301084
Alignment:
| Q |
119 |
gaaagaaaacatcaaaatattctcaatgtaagaagag |
155 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
12301048 |
gaaagaaaacatcaacatattctcaatgtaagtagag |
12301084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 27036185 - 27036086
Alignment:
| Q |
122 |
agaaaacatcaaaatattctcaatgtaagaagagttttactgtttcagtcaaaattaccccctacattttggtcttatgctatctttcatgttgtgtttc |
221 |
Q |
| |
|
||||||||||| ||||||||||||| | |||| |||| | ||||| ||||||||||| ||| | |||||||| ||||| || || |||| |||||||| |
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|
| T |
27036185 |
agaaaacatcagcatattctcaatgttggcagagctttattatttcaatcaaaattaccacct-ctttttggtcatatgccattttacatgctgtgtttc |
27036087 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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