View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8166_low_2 (Length: 497)
Name: NF8166_low_2
Description: NF8166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8166_low_2 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 452; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 19 - 497
Target Start/End: Complemental strand, 35265126 - 35264647
Alignment:
| Q |
19 |
ctataagctttacactattttttaccaaacagagccatatccttttttacgggcttgaataattctatttcccatgttagtgatcaattacagttgatgg |
118 |
Q |
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| T |
35265126 |
ctataagctttacactattttttaccaaacagagccatatccttttttacgggcttgaataattctatttcccatgttagtgatcaattacagttgatgg |
35265027 |
T |
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| Q |
119 |
-ttttagggcattcaaaaagaataaccaagaggttgaatatgctctttcctcatctgctaagaattaactgacttttgctaccttctaatccaagttagt |
217 |
Q |
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| T |
35265026 |
gttttagggcattcaaaaagaataactaagaggttgaatatgctctttcctcatcttctaagaattaactgacttttgctatcttctaatccaagttagt |
35264927 |
T |
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| Q |
218 |
gaagaatagttggtgtagtgttataggccataccatatatcaaaatccatggctagtagctaccaccttgggtgcaaacccaaatttaaagcatgttcaa |
317 |
Q |
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| T |
35264926 |
gaagaatagttggtgtagtgttataggccataccatatatcaaaatccatggctagtagctaccaccttgggttcaaacccaaatttaaagcatgttcaa |
35264827 |
T |
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| Q |
318 |
tcaaacaagtgcttgcgaaaattctgatgtccttgtgacttagagaatttggaatcggttcctttctccatatcacttcagctaagtatcagcaacacat |
417 |
Q |
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| T |
35264826 |
tcaaacaagtgcttgcgaaaattctgatgtccttgtgacttagggaatttggaatcggttcctttctccatatcacttcagctaagtatcagcaacacat |
35264727 |
T |
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| Q |
418 |
aaccctgctcttcactcaactatcttttgcatccaacttcagcttggagcaccaagatccttcttctgtaacgctgtggt |
497 |
Q |
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| T |
35264726 |
aaccctgctcttcactcaactatcttttgcatccaacttcagcttggagcaccaagatccttcttctgtaacgctgtggt |
35264647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 274 - 482
Target Start/End: Complemental strand, 35272235 - 35272032
Alignment:
| Q |
274 |
tagctaccaccttgggtgcaaacccaaatttaaagcatgttcaatcaaacaagtgcttgcgaaaatt-ctgatgtccttgtgacttagagaatttggaat |
372 |
Q |
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|||| ||||||| |||| |||||||||||| |||| | ||||| |||||||||||||||| |||||| | ||||||| ||||||||||| ||||||||| |
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| T |
35272235 |
tagcaaccacctcgggttcaaacccaaattcaaagaacgttcagtcaaacaagtgcttgcaaaaatttccgatgtccctgtgacttaga--atttggaat |
35272138 |
T |
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| Q |
373 |
cggttcctttctccatatcacttcagctaagtatcagcaacacataaccctgctcttcactcaactatcttttgcatccaacttcagcttggagcaccaa |
472 |
Q |
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| T |
35272137 |
ctgttcct----ccatattacttcagctaagtatcagcaacacatatcagtgctcttcacccaactatcttttgcatccaagttcagcttggagacccaa |
35272042 |
T |
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| Q |
473 |
gatccttctt |
482 |
Q |
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| T |
35272041 |
gatccttctt |
35272032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 70 - 224
Target Start/End: Complemental strand, 35272409 - 35272253
Alignment:
| Q |
70 |
ggcttgaataattctatttcccatgttagtgatcaattacagttgatggttt-tagggca-ttcaaaaagaataaccaagaggttgaatatgctctttcc |
167 |
Q |
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||||||||| ||||||||| |||||||||||||||||||| |||||||| || |||| || ||||||| || |||| |||||||||| | |||||||||| |
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| T |
35272409 |
ggcttgaatgattctatttaccatgttagtgatcaattaccgttgatgggttctaggccaattcaaaaggagtaacaaagaggttgagtgtgctctttcc |
35272310 |
T |
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| Q |
168 |
tcatctgctaagaattaactgacttttgctaccttctaatccaagttagtgaagaat |
224 |
Q |
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| T |
35272309 |
tcatctgctaagaattaactgacttttgctatcttctaatcaaagttagtgaagaat |
35272253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 434
Target Start/End: Complemental strand, 35209480 - 35209432
Alignment:
| Q |
386 |
catatcacttcagctaagtatcagcaacacataaccctgctcttcactc |
434 |
Q |
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| T |
35209480 |
catatcacttcagctaagtatcagcagcatgtatccatgctcttcactc |
35209432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 342 - 487
Target Start/End: Complemental strand, 36778578 - 36778439
Alignment:
| Q |
342 |
tgatgtccttgtgacttagagaatttggaatcggttcctttctccatatcacttcagctaagtatcagcaacacataaccctgctcttcactcaactatc |
441 |
Q |
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|||||||| ||||||||||| |||||||||| |||||| ||||||||||| | ||||||||||| |||||||| || |||||||||| |||||||| |
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| T |
36778578 |
tgatgtccctgtgacttaga--atttggaatctgttcct----ccatatcactttacctaagtatcagaaacacatatccatgctcttcacccaactatc |
36778485 |
T |
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| Q |
442 |
ttttgcatccaacttcagcttggagcaccaagatccttcttctgta |
487 |
Q |
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| T |
36778484 |
ttttgcatccaagttcagcttggagccccaggatccttcttctgta |
36778439 |
T |
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