View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8166_low_3 (Length: 489)
Name: NF8166_low_3
Description: NF8166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8166_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Original strand, 34582367 - 34582832
Alignment:
| Q |
1 |
cgtgatttacagatcgaagaaacgtaatggaatcagataccgtatgatctagattttgaggagatggaagcgatttgcgatttcagcaagcgaatgagag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34582367 |
cgtgatttacagatcgaagaaacgtaatggaatcagataccgtatgatctagattttgaggagatggaagcgatttgcgatttcagcaagcgaatgagag |
34582466 |
T |
|
| Q |
101 |
tgatgatcgacggagatagggttttgatgcggttgcgatgagaaaagagatgcgagaaaattcaccgtttgcttcaaacgaaaatgaacgagaaagttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34582467 |
tgatgatcgacggagatagggttttgatgcggttgcgatgagaaaagagatgcgagaaaattcaccgtttgcttcaaacgaaaatgaacgagaaagttct |
34582566 |
T |
|
| Q |
201 |
gagaggttgaagaggaaacagtgaaaatgagcattgtggtttcgaattgggtttatatagtaacggtttcagtgtttctgacttcgtaaaggcgggtaat |
300 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
34582567 |
gagaggttgaaaaggaaacagtggaaatgagcattgtggtttcgaattgggtttatatagtaacggcttcagtgtttctgacttcgtaaaggcgggtaat |
34582666 |
T |
|
| Q |
301 |
gtaattgacgagaaatggaggcaaaacgatttggggtcaggtgaggttgaccatggtcccatcgnnnnnnnctaactcgaatttcattaaaaaggtttag |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
34582667 |
gtaattgacgagaaatggaggcaaaacgatttggggtcaggtggggttgaccatggtcccatcgtttttttctaactcgaatttcatt--aaaggtttag |
34582764 |
T |
|
| Q |
401 |
aataatgtcttttattaccttcnnnnnnnnngaggggaatgtcttttattacttgccaaattgtatact |
469 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34582765 |
aataatgtcttttatta-cttttttctttttgaggggaatgtcttttattacttgccaaattgtatact |
34582832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University