View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8166_low_4 (Length: 474)
Name: NF8166_low_4
Description: NF8166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8166_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 73; Significance: 4e-33; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 5885300 - 5885208
Alignment:
| Q |
8 |
tgaaagtaatgtaattgatctcattgttggttaattactctgagtgacgataacaacacaaatggtttgtgttataaagtttcagaaacatgc |
100 |
Q |
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| T |
5885300 |
tgaaagtaatgtaatcgatctcattgttggttaattactctgagtgacaacaacaacacaaatggtttgttttataaagtttcagaaatatgc |
5885208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 5847224 - 5847135
Alignment:
| Q |
11 |
aagtaatgtaattgatctcattgttggttaattactctgagtgacgataacaacacaaatggtttgtgttataaagtttcagaaacatgc |
100 |
Q |
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| T |
5847224 |
aagtaatgtaatcgatctcattgttggttaattactctgagtgacaacaacagcacaaatggtttgtgttataaagtttcagaaatatgc |
5847135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 392 - 457
Target Start/End: Original strand, 5585724 - 5585789
Alignment:
| Q |
392 |
ttatgaagtagtagcaacaaagaaggaatgaaactaatgtgattctcattgctctctctaattact |
457 |
Q |
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| T |
5585724 |
ttatgaagtagtagcaacaaagaaggaatgaaactaatgtgattctcattgctctctctaattact |
5585789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 409 - 441
Target Start/End: Original strand, 3750147 - 3750179
Alignment:
| Q |
409 |
caaagaaggaatgaaactaatgtgattctcatt |
441 |
Q |
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| T |
3750147 |
caaagaaggaatgaaactaatgtgattctcatt |
3750179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 290
Target Start/End: Original strand, 5607832 - 5607919
Alignment:
| Q |
203 |
catattaagcacaatctttttaagtcctccattgtgactgggaaaaatgtttccttaaaaagggaaagacaacattgaatgtctttta |
290 |
Q |
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| T |
5607832 |
catattaaacataatctttgtgggtcctccattgtccctaagaaaaatgtttccttgaaaagtgcaagacagctttgaatgtctttta |
5607919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 282
Target Start/End: Complemental strand, 5846893 - 5846828
Alignment:
| Q |
217 |
tctttttaagtcctccattgtgactgggaaaaatgtttccttaaaaagggaaagacaacattgaat |
282 |
Q |
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| T |
5846893 |
tctttttgggtcgtccattgtggatgagaaaaacgttgccttaaaaagggcaagacaacattgaat |
5846828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 447
Target Start/End: Original strand, 5560179 - 5560230
Alignment:
| Q |
393 |
tatgaagtagtagcaacaaagaaggaatgaaactaatgtgattctcattgctctc |
447 |
Q |
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| T |
5560179 |
tatgaagtagtagcag---agaaggaatgaaactaatataattctcattgctctc |
5560230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 281
Target Start/End: Complemental strand, 5884963 - 5884899
Alignment:
| Q |
217 |
tctttttaagtcctccattgtgactgggaaaaatgtttccttaaaaagggaaagacaacattgaa |
281 |
Q |
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| T |
5884963 |
tctttttgggtcgtccattgtggatgagaaaaatgttgccttaaaaagagcaagacaacattgaa |
5884899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 23268630 - 23268728
Alignment:
| Q |
1 |
aaaacagtgaaagtaatgtaattgatctcattgttggttaattactctgagtgacgataacaacacaaatggtttgtgttataaagtttcagaaacatgc |
100 |
Q |
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| T |
23268630 |
aaaacaatgaaagtaatgtaattgatctcattgttgattaa-tactctgaatgaaaacaacagaacaaatggtttgttttgtacagtttcagaaatatgc |
23268728 |
T |
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