View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8166_low_5 (Length: 471)
Name: NF8166_low_5
Description: NF8166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8166_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 27 - 453
Target Start/End: Original strand, 26315236 - 26315665
Alignment:
| Q |
27 |
atcaacagtaaaataatttttcatgttcaaatataaaatagtctcacttcatcactaggcttttgtgaagttccatcccagttctatgaagc-ttcatgc |
125 |
Q |
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| T |
26315236 |
atcaacagtaaagtaatttttcatattcaaatataaaatagtctcacttcatcactaggcttttgtgaagttccatcccagttctatgaagccttcatgc |
26315335 |
T |
|
| Q |
126 |
ttagtcatcaacattannnnnnnnn---gtaattttagctaaatgtgggattaagataggcaaaatgattatgtatgatgaaaccacaccatgtcatgca |
222 |
Q |
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| T |
26315336 |
ttagtcatcaacattattttttttttttgtaattttggctaaatgtgggattaagataggcaaaatgattatgtatgatgaaaccacaccatgtcatgca |
26315435 |
T |
|
| Q |
223 |
attaaaatttaaaattatcactgaatttttcacaacatgtttagattattgattaactcgctttgtattggaaaattggttatcgtgattctagttgacc |
322 |
Q |
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| T |
26315436 |
attaaaatttaaaattatcactgaaattttcacaacatgtttagattattgattaactcgctttgcactggaaaattggttatcatgattctagatgacc |
26315535 |
T |
|
| Q |
323 |
ttgatattatcgaattgattagatcaaaagttagtttaaattgaagtgatttgagtttgattataactttgaagttaatttgatgttaaaaagttcaacc |
422 |
Q |
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| T |
26315536 |
ttgatattatcgaattgattagatcaaaagttagtttaaattgaagtgatttgagtttgattataactttgaagttaatttgatgttaaaaagttcaacc |
26315635 |
T |
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| Q |
423 |
aaaacacaaaagtgatcttacatagtatctc |
453 |
Q |
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| T |
26315636 |
-aaacacaaaagtgatcttacatagtatctc |
26315665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 196 - 407
Target Start/End: Original strand, 11755402 - 11755606
Alignment:
| Q |
196 |
tatgatgaaaccacaccatgtcatgcaattaaaatttaaaattatcactgaatttttcacaacatgtttagattattgattaactcgctttgtattggaa |
295 |
Q |
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| T |
11755402 |
tatgattaaaccacaccatgtcatgcaatcagaatttagaattatcattgaatttttcataacatgtttagattg-------actcattctgcaccggac |
11755494 |
T |
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| Q |
296 |
aattggttatcgtgattctagttgaccttgatattatcgaattgattagatcaaaagttagtttaaattgaagtgatttgagtttgattataactttgaa |
395 |
Q |
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|||| |||||||||||||| | | || |||||| |||||||||||||||||||||||||||||| || |||| |||||||||||||| ||| ||||| |
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| T |
11755495 |
aatttgttatcgtgattctcgataactttgatactatcgaattgattagatcaaaagttagtttgaagtgaaaagatttgagtttgatattaatattgaa |
11755594 |
T |
|
| Q |
396 |
gttaatttgatg |
407 |
Q |
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| T |
11755595 |
gttaatttgatg |
11755606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 197 - 270
Target Start/End: Original strand, 35219835 - 35219908
Alignment:
| Q |
197 |
atgatgaaaccacaccatgtcatgcaattaaaatttaaaattatcactgaatttttcacaacatgtttagatta |
270 |
Q |
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| T |
35219835 |
atgatgaaaccacaccatgtcatgtaaacaaaatttaaaattatcattgaattttacaaaacatgtttagatta |
35219908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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