View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8166_low_6 (Length: 427)
Name: NF8166_low_6
Description: NF8166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8166_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 174 - 392
Target Start/End: Original strand, 46267052 - 46267270
Alignment:
| Q |
174 |
tgtgttggataacgtggtttctctttcttctcaaaatggaatgtaatgtgagaaatgtttggatccaaaatcatctcttcaatttagagcgggtcttgtt |
273 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46267052 |
tgtgttggataatgtggtttctctttcttctcaaaatggaatgtaatgtgagaaatgtttggatccaaaatcatctcttcaatttagagcgggtcttgtt |
46267151 |
T |
|
| Q |
274 |
ccttctttccaacatatgtgtcatttgtgcatgtcaaccttaaaaaacaaaccaccgtgatggagggaaaataaacacaacactaggtccaacgaatgaa |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46267152 |
ccttctttccaacatatgtgtcatttgtgcatgtcaaccttaaaaaacaaaccaccgtgatggagggaaaataaacacaacactaggtccaacgaatgaa |
46267251 |
T |
|
| Q |
374 |
caagctagtgtctttttta |
392 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
46267252 |
caagctagtgtctttttta |
46267270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 46266879 - 46266945
Alignment:
| Q |
1 |
aacatatacgtaaatgggaaaaacataatcattcttatatgaatatgaatagaggtatataactggt |
67 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
46266879 |
aacatatacgtaaatgggaaaaacataatcattcttatatgaatatgaatagtggtatatacctggt |
46266945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University