View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8166_low_7 (Length: 424)

Name: NF8166_low_7
Description: NF8166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8166_low_7
NF8166_low_7
[»] chr1 (5 HSPs)
chr1 (125-410)||(40812023-40812309)
chr1 (125-198)||(16962795-16962868)
chr1 (125-195)||(51598589-51598659)
chr1 (125-194)||(2972127-2972196)
chr1 (100-128)||(40812326-40812354)
[»] chr3 (8 HSPs)
chr3 (289-401)||(25020525-25020638)
chr3 (125-197)||(12061052-12061124)
chr3 (245-289)||(12061180-12061224)
chr3 (126-198)||(23560764-23560836)
chr3 (125-183)||(48866597-48866656)
chr3 (126-183)||(48866644-48866702)
chr3 (245-282)||(23560679-23560716)
chr3 (104-132)||(48866556-48866584)
[»] chr8 (7 HSPs)
chr8 (125-198)||(39567666-39567739)
chr8 (125-198)||(39270194-39270267)
chr8 (125-197)||(8096183-8096255)
chr8 (125-196)||(13366133-13366204)
chr8 (125-198)||(45377721-45377794)
chr8 (245-289)||(8096089-8096133)
chr8 (245-280)||(13366254-13366289)
[»] chr7 (3 HSPs)
chr7 (125-198)||(21709963-21710036)
chr7 (125-195)||(26025518-26025588)
chr7 (125-195)||(33458697-33458767)
[»] chr4 (6 HSPs)
chr4 (125-198)||(35055944-35056017)
chr4 (125-195)||(756859-756929)
chr4 (125-198)||(16038859-16038932)
chr4 (125-195)||(702273-702343)
chr4 (125-195)||(770572-770642)
chr4 (125-195)||(40145392-40145462)
[»] chr2 (2 HSPs)
chr2 (125-198)||(14510152-14510225)
chr2 (245-280)||(14510069-14510104)
[»] chr6 (8 HSPs)
chr6 (126-198)||(14326559-14326631)
chr6 (126-198)||(14419569-14419641)
chr6 (127-198)||(21283345-21283416)
chr6 (125-196)||(16269374-16269445)
chr6 (245-279)||(14326657-14326691)
chr6 (245-279)||(14419667-14419701)
chr6 (104-132)||(14326517-14326545)
chr6 (104-132)||(14419527-14419555)
[»] scaffold0031 (1 HSPs)
scaffold0031 (125-195)||(123794-123864)
[»] scaffold0122 (2 HSPs)
scaffold0122 (125-198)||(16858-16931)
scaffold0122 (245-280)||(16775-16810)


Alignment Details
Target: chr1 (Bit Score: 169; Significance: 2e-90; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 125 - 410
Target Start/End: Complemental strand, 40812309 - 40812023
Alignment:
Q  125 caatcctttcacattccaatctaaacctatgtttggatctaatctaaatccttccaaatcccaatataaacccannnnnnnatgaacattaaccattnnn 224  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||       ||||||||||||||||       
T  40812309 caatcctttcacattccaatctaaacctatttttggatctaatctaaatccttccaaatcccaatttaaacccatttttttatgaacattaaccattttg 40812210  T
Q  225 nnnnnnnnnnnnnnnnnnnngggagcagatttggaccggattaaaagggaaaaatgagtttaaacatctcaagacataattttttcacgcctcacatacg 324  Q
                        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40812209 ctgttgttgtgttgttgttggggagcagatttggaccggattaaaagggaaaaatgagtttaaacatctcaagacataattttttcacgcctcacatacg 40812110  T
Q  325 tgcagatcgaagccgaacaaattatcacggttacaagatgacggaggaatagttatgga-ggtcttttactcctccaacaaaaggca 410  Q
    ||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  40812109 tgctgatcgaagccgaacaaattaccacggttacaagatgatggaggaatagttatggagggtcttttactcctccaacaaaaggca 40812023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 125 - 198
Target Start/End: Original strand, 16962795 - 16962868
Alignment:
Q  125 caatcctttcacattccaatctaaacctatgtttggatctaatctaaatccttccaaatcccaatataaaccca 198  Q
    ||||||||||| ||| ||||||||||| || |||||||||||||||||| ||||||||||||||| ||||||||    
T  16962795 caatcctttcaaatttcaatctaaacccatttttggatctaatctaaattcttccaaatcccaatctaaaccca 16962868  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 125 - 195
Target Start/End: Complemental strand, 51598659 - 51598589
Alignment:
Q  125 caatcctttcacattccaatctaaacctatgtttggatctaatctaaatccttccaaatcccaatataaac 195  Q
    ||||||||||| ||||||||||||| | || |||||||||||||||||| ||||||||||||||| |||||    
T  51598659 caatcctttcaaattccaatctaaatccatttttggatctaatctaaattcttccaaatcccaatctaaac 51598589  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 125 - 194
Target Start/End: Original strand, 2972127 - 2972196
Alignment:
Q  125 caatcctttcacattccaatctaaacctatgtttggatctaatctaaatccttccaaatcccaatataaa 194  Q
    ||||||||||| | ||||||||||||| || ||||||||||||||||| |||||||||| ||||||||||    
T  2972127 caatcctttcaaagtccaatctaaacccatttttggatctaatctaaacccttccaaattccaatataaa 2972196  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 128
Target Start/End: Complemental strand, 40812354 - 40812326
Alignment:
Q  100 tcacaaaaaactcattttcgaattccaat 128  Q
    |||||||||||||||||||||||||||||    
T  40812354 tcacaaaaaactcattttcgaattccaat 40812326  T

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Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 289 - 401
Target Start/End: Complemental strand, 25020638 - 25020525
Alignment:
Q  289 catctcaagacataattttttcacgcctcacatacgtgcagatcgaagccgaacaaattatcacggttacaagatgacggaggaatagttatgga-ggtc 387  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||| ||| || || |||| ||||||| |||| ||||    
T  25020638 catctcaagacataattttttcatgcctcacatacgtgcagatcaaaggcgaacaaattatcacggtgacatgacgatggagaaatagttgtggagggtc 25020539  T
Q  388 ttttactcctccaa 401  Q
    | || |||||||||    
T  25020538 tcttcctcctccaa 25020525  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 12061052 - 12061124
Alignment:
Q  125 caatcctttcacattccaatctaaacctatgtttggatctaatctaaatccttccaaatcccaatataaaccc 197  Q
    ||||||||||| |||| |||||||| | || |||||||||||||||||  ||||||||||||||| |||||||    
T  12061052 caatcctttcatattctaatctaaatccatttttggatctaatctaaactcttccaaatcccaatctaaaccc 12061124  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 289
Target Start/End: Original strand, 12061180 - 12061224
Alignment:
Q  245 gggagcagatttggaccggattaaaagggaaaaatgagtttaaac 289  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||    
T  12061180 gggagcagatttggaccgggttaaaagggaaaaatgggtttaaac 12061224  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 126 - 198
Target Start/End: Complemental strand, 23560836 - 23560764
Alignment:
Q  126 aatcctttcacattccaatctaaacctatgtttggatctaatctaaatccttccaaatcccaatataaaccca 198  Q
    |||||||||| ||||||||||||||| || |||||||||||||||||  ||| ||||| |||||  |||||||    
T  23560836 aatcctttcatattccaatctaaacccatttttggatctaatctaaacactttcaaattccaatccaaaccca 23560764  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 183
Target Start/End: Original strand, 48866597 - 48866656
Alignment:
Q  125 caatcctttcacattccaatctaaa-cctatgtttggatctaatctaaatccttccaaat 183  Q
    ||||||||||| ||| ||||||||| || || |||||||||||||||||||||| |||||    
T  48866597 caatcctttcaaatttcaatctaaaacccatttttggatctaatctaaatcctttcaaat 48866656  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 183
Target Start/End: Original strand, 48866644 - 48866702
Alignment:
Q  126 aatcctttcacattccaatctaaa-cctatgtttggatctaatctaaatccttccaaat 183  Q
    |||||||||| ||| ||||||||| || || ||||||||||||||||| ||||||||||    
T  48866644 aatcctttcaaatttcaatctaaaacccatttttggatctaatctaaacccttccaaat 48866702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 282
Target Start/End: Complemental strand, 23560716 - 23560679
Alignment:
Q  245 gggagcagatttggaccggattaaaagggaaaaatgag 282  Q
    |||||| ||||| |||||||||||||||||||||||||    
T  23560716 gggagctgatttagaccggattaaaagggaaaaatgag 23560679  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 132
Target Start/End: Original strand, 48866556 - 48866584
Alignment:
Q  104 aaaaaactcattttcgaattccaatcctt 132  Q
    |||||||||||||||||||||||||||||    
T  48866556 aaaaaactcattttcgaattccaatcctt 48866584  T

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Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 39567739 - 39567666
Alignment:
Q  125 caatcctttcacattccaatctaaacctatgtttggatctaatctaaatccttccaaatcccaatataaaccca 198  Q
    ||||||||||| ||||||||||||||| || |||||||||||||||||| ||||||||||||||| ||||||||    
T  39567739 caatcctttcaaattccaatctaaacccatttttggatctaatctaaattcttccaaatcccaatctaaaccca 39567666  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 125 - 198
Target Start/End: Original strand, 39270194 - 39270267
Alignment:
Q  125 caatcctttcacattccaatctaaacctatgtttggatctaatctaaatccttccaaatcccaatataaaccca 198  Q
    ||||||||||| ||||||||||||||  || |||| ||||||||||||| ||||||||||||||| ||||||||    
T  39270194 caatcctttcaaattccaatctaaactcatttttgaatctaatctaaattcttccaaatcccaatctaaaccca 39270267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 125 - 197
Target Start/End: Complemental strand, 8096255 - 8096183
Alignment:
Q  125 caatcctttcacattccaatctaaacctatgtttggatctaatctaaatccttccaaatcccaatataaaccc 197  Q
    ||||||||||| ||||||||||||| | || |||||||||||||||||  ||||||||||||||| |||||||    
T  8096255 caatcctttcatattccaatctaaatccatttttggatctaatctaaactcttccaaatcccaatctaaaccc 8096183  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 13366133 - 13366204
Alignment:
Q  125 caatcctttcacattccaatctaaacctatgtttggatctaatctaaatccttccaaatcccaatataaacc 196  Q
    ||||||||||| ||||||||||||||  || ||||||||||||||||| |||||||||| ||||| ||||||    
T  13366133 caatcctttcatattccaatctaaactcatttttggatctaatctaaacccttccaaattccaatctaaacc 13366204  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 45377794 - 45377721
Alignment:
Q  125 caatcctttcacattccaatctaaacctatgtttggatctaatctaaatccttccaaatcccaatataaaccca 198  Q
    ||||||||||| ||||||||||||||  || |||||||||||| ||||| ||| |||||||||||  |||||||    
T  45377794 caatcctttcaaattccaatctaaactcatttttggatctaatttaaattctttcaaatcccaatccaaaccca 45377721  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 8096133 - 8096089
Alignment:
Q  245 gggagcagatttggaccggattaaaagggaaaaatgagtttaaac 289  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||    
T  8096133 gggagcagatttggaccgggttaaaagggaaaaatgggtttaaac 8096089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 280
Target Start/End: Original strand, 13366254 - 13366289
Alignment:
Q  245 gggagcagatttggaccggattaaaagggaaaaatg 280  Q
    ||||||||||||||||||||||||||||||||||||    
T  13366254 gggagcagatttggaccggattaaaagggaaaaatg 13366289  T

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Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 125 - 198
Target Start/End: Original strand, 21709963 - 21710036
Alignment:
Q  125 caatcctttcacattccaatctaaacctatgtttggatctaatctaaatccttccaaatcccaatataaaccca 198  Q
    ||||||||||| ||||||||||||||| || |||||||||||||||||| ||||||||||||||| ||||||||    
T  21709963 caatcctttcaaattccaatctaaacccatttttggatctaatctaaattcttccaaatcccaatctaaaccca 21710036  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 125 - 195
Target Start/End: Complemental strand, 26025588 - 26025518
Alignment:
Q  125 caatcctttcacattccaatctaaacctatgtttggatctaatctaaatccttccaaatcccaatataaac 195  Q
    ||||||||||| ||||||||||||||| || |||||||||||||||||| ||||||||||||||| |||||    
T  26025588 caatcctttcaaattccaatctaaacccatttttggatctaatctaaattcttccaaatcccaatctaaac 26025518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 33458697 - 33458767
Alignment:
Q  125 caatcctttcacattccaatctaaacctatgtttggatctaatctaaatccttccaaatcccaatataaac 195  Q
    |||| |||||| ||||||||||||||| || |||||||||||||||||  ||||||||| ||||| |||||    
T  33458697 caattctttcaaattccaatctaaacccatttttggatctaatctaaactcttccaaattccaatttaaac 33458767  T

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Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 35056017 - 35055944
Alignment:
Q  125 caatcctttcacattccaatctaaacctatgtttggatctaatctaaatccttccaaatcccaatataaaccca 198  Q
    ||||||||||| |||| ||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||    
T  35056017 caatcctttcaaattctaatctaaacctatttttggatctaatctaaattcttccaaatcccaatctaaaccca 35055944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 756859 - 756929
Alignment:
Q  125 caatcctttcacattccaatctaaacctatgtttggatctaatctaaatccttccaaatcccaatataaac 195  Q
    ||||||||||| ||||||||||||||| || |||||||||||||||||| ||||||||||||||| |||||    
T  756859 caatcctttcaaattccaatctaaacccatttttggatctaatctaaattcttccaaatcccaatctaaac 756929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 16038932 - 16038859
Alignment:
Q  125 caatcctttcacattccaatctaaacctatgtttggatctaatctaaatccttccaaatcccaatataaaccca 198  Q
    ||||||||||| |||| |||||||||| || |||||||||||||||||| ||||||||||||||| ||||||||    
T  16038932 caatcctttcaaattcaaatctaaaccgatttttggatctaatctaaattcttccaaatcccaatctaaaccca 16038859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 125 - 195
Target Start/End: Complemental strand, 702343 - 702273
Alignment:
Q  125 caatcctttcacattccaatctaaacctatgtttggatctaatctaaatccttccaaatcccaatataaac 195  Q
    ||||||||||| ||||||||||||||  || |||||||||||||||||| ||||||||||| ||| |||||    
T  702343 caatcctttcaaattccaatctaaactcatttttggatctaatctaaattcttccaaatcctaatctaaac 702273  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 125 - 195
Target Start/End: Complemental strand, 770642 - 770572
Alignment:
Q  125 caatcctttcacattccaatctaaacctatgtttggatctaatctaaatccttccaaatcccaatataaac 195  Q
    ||||||||||| ||||||||||||||  || |||||||||||||||||| ||||||||||| ||| |||||    
T  770642 caatcctttcaaattccaatctaaactcatttttggatctaatctaaattcttccaaatcctaatctaaac 770572  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 195
Target Start/End: Complemental strand, 40145462 - 40145392
Alignment:
Q  125 caatcctttcacattccaatctaaacctatgtttggatctaatctaaatccttccaaatcccaatataaac 195  Q
    ||||||||||| ||||||||||||||| || | |||||||||| ||||  ||||||||| ||||| |||||    
T  40145462 caatcctttcaaattccaatctaaacccatttatggatctaatttaaactcttccaaattccaatttaaac 40145392  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 14510225 - 14510152
Alignment:
Q  125 caatcctttcacattccaatctaaacctatgtttggatctaatctaaatccttccaaatcccaatataaaccca 198  Q
    ||||||||||| ||||||||||||||  || |||||||||||||||||||||||||| ||||||| ||||||||    
T  14510225 caatcctttcatattccaatctaaactcatttttggatctaatctaaatccttccaactcccaatctaaaccca 14510152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 280
Target Start/End: Complemental strand, 14510104 - 14510069
Alignment:
Q  245 gggagcagatttggaccggattaaaagggaaaaatg 280  Q
    ||||||||||||||||| ||||||||||||||||||    
T  14510104 gggagcagatttggaccagattaaaagggaaaaatg 14510069  T

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Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 126 - 198
Target Start/End: Original strand, 14326559 - 14326631
Alignment:
Q  126 aatcctttcacattccaatctaaacctatgtttggatctaatctaaatccttccaaatcccaatataaaccca 198  Q
    |||||||||| ||||||||||||||| || |||||||||||||||||  ||||||||||||||| ||||||||    
T  14326559 aatcctttcatattccaatctaaacccatttttggatctaatctaaacacttccaaatcccaatctaaaccca 14326631  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 126 - 198
Target Start/End: Original strand, 14419569 - 14419641
Alignment:
Q  126 aatcctttcacattccaatctaaacctatgtttggatctaatctaaatccttccaaatcccaatataaaccca 198  Q
    |||||||||| ||||||||||||||| || |||||||||||||||||  ||||||||||||||| ||||||||    
T  14419569 aatcctttcatattccaatctaaacccatttttggatctaatctaaacacttccaaatcccaatctaaaccca 14419641  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 21283345 - 21283416
Alignment:
Q  127 atcctttcacattccaatctaaacctatgtttggatctaatctaaatccttccaaatcccaatataaaccca 198  Q
    ||||||||| ||||||||||||||| |  |||||||||||||||||| ||||||||||||||| ||||||||    
T  21283345 atcctttcaaattccaatctaaacccaattttggatctaatctaaattcttccaaatcccaatctaaaccca 21283416  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 196
Target Start/End: Complemental strand, 16269445 - 16269374
Alignment:
Q  125 caatcctttcacattccaatctaaacctatgtttggatctaatctaaatccttccaaatcccaatataaacc 196  Q
    ||||||||||| |||||||| |||||  || ||| ||||||||||||| |||| ||||| ||||| ||||||    
T  16269445 caatcctttcaaattccaatataaacaaatttttagatctaatctaaacccttacaaattccaatctaaacc 16269374  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 279
Target Start/End: Original strand, 14326657 - 14326691
Alignment:
Q  245 gggagcagatttggaccggattaaaagggaaaaat 279  Q
    |||||| ||||||||||||||||||||||||||||    
T  14326657 gggagcggatttggaccggattaaaagggaaaaat 14326691  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 279
Target Start/End: Original strand, 14419667 - 14419701
Alignment:
Q  245 gggagcagatttggaccggattaaaagggaaaaat 279  Q
    |||||| ||||||||||||||||||||||||||||    
T  14419667 gggagcggatttggaccggattaaaagggaaaaat 14419701  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 132
Target Start/End: Original strand, 14326517 - 14326545
Alignment:
Q  104 aaaaaactcattttcgaattccaatcctt 132  Q
    |||||||||||||||||||||||||||||    
T  14326517 aaaaaactcattttcgaattccaatcctt 14326545  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 132
Target Start/End: Original strand, 14419527 - 14419555
Alignment:
Q  104 aaaaaactcattttcgaattccaatcctt 132  Q
    |||||||||||||||||||||||||||||    
T  14419527 aaaaaactcattttcgaattccaatcctt 14419555  T

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Target: scaffold0031 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 123794 - 123864
Alignment:
Q  125 caatcctttcacattccaatctaaacctatgtttggatctaatctaaatccttccaaatcccaatataaac 195  Q
    ||||||||||| ||||||||||||||| || |||| ||||||||||||| ||||||||||||||| |||||    
T  123794 caatcctttcaaattccaatctaaacccatttttgaatctaatctaaattcttccaaatcccaatctaaac 123864  T

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Target: scaffold0122 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 16931 - 16858
Alignment:
Q  125 caatcctttcacattccaatctaaacctatgtttggatctaatctaaatccttccaaatcccaatataaaccca 198  Q
    ||||||||||| ||||||||||||||  || ||||||| ||||||||| ||||||||||||||||||| |||||    
T  16931 caatcctttcatattccaatctaaactcatttttggatgtaatctaaacccttccaaatcccaatatataccca 16858  T

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Target: scaffold0122; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 280
Target Start/End: Complemental strand, 16810 - 16775
Alignment:
Q  245 gggagcagatttggaccggattaaaagggaaaaatg 280  Q
    ||||||||||||| ||||||||||||||||||||||    
T  16810 gggagcagatttgaaccggattaaaagggaaaaatg 16775  T

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