View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8166_low_8 (Length: 424)
Name: NF8166_low_8
Description: NF8166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8166_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 16 - 402
Target Start/End: Complemental strand, 30467742 - 30467357
Alignment:
| Q |
16 |
tggacatccaaatgatggtctctgcatgttatgttattttcctctatggtcagtcagccaaacttatatatggagtatagtttgtgtatgtgtttgtgag |
115 |
Q |
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| T |
30467742 |
tggacatccaaatgatggtctctgcatgttatgttattttcctctatggtcagtcagccaaacttatatatggagtatagtttgtgtatgtgtttgtgag |
30467643 |
T |
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| Q |
116 |
taaatatatattcgacaacatacataattatgtgctatatttatatatgttggtaaatatgacaatactaaaatttgtatactgtcaatcttgtctttaa |
215 |
Q |
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| T |
30467642 |
taaatatatattcgacaacatacataattatgtgctatatttatatatgttggtaaatatgacaatact--aatttgtatactgtcaatcttgtctttaa |
30467545 |
T |
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| Q |
216 |
aaaggatccaaaattcagagaagaaaacaacgtgcatggctccaaaa-agtaaagtaatgtaatgaatagttaccactgttgtcggaggtggtgggaaac |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
30467544 |
aaaggatccaaaattcagagaagaaaacaacgtgcatggctccaaaatagtaaagtgatgtaatgaatagttaccactgttgtcagaggtggtgggaaac |
30467445 |
T |
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| Q |
315 |
aatgtgttcctgcccggattattgcggttgttggagtctgttgatcaacggtcaaagaaatgcatcacacactttagatagacagatc |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
30467444 |
aatgtgttcctgcccggattattgcggttgttggagtctgttgatcaacggtcaaagaaatacatcacacactttagatagacagatc |
30467357 |
T |
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