View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8167_low_1 (Length: 414)
Name: NF8167_low_1
Description: NF8167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8167_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 115 - 397
Target Start/End: Original strand, 4601418 - 4601704
Alignment:
| Q |
115 |
atagatataattcatatgcattaatag-----tatctttttttacattgtcaatctattatgaccnnnnnnnnngacaaaaattatttgannnnnnngaa |
209 |
Q |
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| T |
4601418 |
atagatataattcatatgcactaataagtatatatctttttttacattgtcaatctattatgacctttttttt-gacaaaaattatttgatttttttaaa |
4601516 |
T |
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| Q |
210 |
ggactaaaattatttgatttatagttacaatttgtatcaattaatctgaatttatatatcgcattagaggtaccttatagcgatgatagtgatcaatagc |
309 |
Q |
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| T |
4601517 |
ggactaaaattatttgatttatagttacaatttgtatcaattaatctgaaattatatatcgcattagaggtaccttatagcgatgatagtgatcaatagc |
4601616 |
T |
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| Q |
310 |
tatatctgcattctttccatcctttacacgtcctgtatgcagttgtacaaattactatattagaagaaaaacatgactcttgccagta |
397 |
Q |
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| T |
4601617 |
tatatctgcattctttccatcctttacacgtcctgtatgcagttgtacaaattactatattagaagaaaaatatgactcctgccagta |
4601704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 212 - 385
Target Start/End: Original strand, 4625768 - 4625941
Alignment:
| Q |
212 |
actaaaattatttgatttatagttacaatttgtatcaattaatctgaatttatatatcgcattagaggtaccttatagcgatgatagtgatcaatagcta |
311 |
Q |
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| T |
4625768 |
actaaaattatttgatgtacagttacaatttgtatcaattaatctgaaattatatatcacattagaggtaccttataacgatgatagtgatcaatagcta |
4625867 |
T |
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| Q |
312 |
tatctgcattctttccatcctttacacgtcctgtatgcagttgtacaaattactatattagaagaaaaacatga |
385 |
Q |
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| T |
4625868 |
catctgcattctttccatcctttaccatccctgtatgcagttacaccaattaccacattagaagaaaaatatga |
4625941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 170
Target Start/End: Original strand, 4625676 - 4625734
Alignment:
| Q |
115 |
atagatataattcatatgcattaatagtatc---tttttttacattgtcaatctattat |
170 |
Q |
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|||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
4625676 |
atagatttaattcatatgcactaatagtatacattttttttacattgtcaatctattat |
4625734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 213 - 350
Target Start/End: Complemental strand, 18801857 - 18801720
Alignment:
| Q |
213 |
ctaaaattatttgatttatagttacaatttgtatcaattaatctgaatttatatatcgcattagaggtaccttatagcgatgatagtgatcaatagctat |
312 |
Q |
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||||||| |||||||||| |||||||| | ||||||||| ||||||||| || ||| |||| | |||||||||| |||||||||||||||| ||||| |
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| T |
18801857 |
ctaaaatcatttgatttactgttacaatatatatcaattattctgaatttttacatcacattgggtgtaccttataacgatgatagtgatcaacagctac |
18801758 |
T |
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| Q |
313 |
atctgcattctttccatcctttacacgtcctgtatgca |
350 |
Q |
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| T |
18801757 |
atctgcgttctttccatcctttatatttcctgtatgca |
18801720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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